PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000773068

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 88aa MW: 9524.98 Da PI: 10.1757

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000773068	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.7	5.6e-22	11	53	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk MDP0000773068 11 LENTNGRQATYAKRKNGIMKKANELSILCDIDIVLLMFSPTGK 53 589999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.352	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-27	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-23	1	58	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.84E-22	2	54	No hit	No description
PRINTS	PR00404	1.8E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-20	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MGRVKLKIKG LENTNGRQAT YAKRKNGIMK KANELSILCD IDIVLLMFSP TGKPSLCNGE 60 GRKEGTGKEG RKEETGEEAT GKEGRKE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846114.1	2e-31	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_018846115.1	2e-31	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_018846116.1	2e-31	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_018846117.1	2e-31	PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
Refseq	XP_018846118.1	2e-31	PREDICTED: agamous-like MADS-box protein AGL30 isoform X3
Refseq	XP_018846119.1	2e-31	PREDICTED: agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	1e-27	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A498I3A2	3e-44	A0A498I3A2_MALDO; Uncharacterized protein
STRING	XP_008221600.1	2e-30	(Prunus mume)
STRING	XP_004298422.1	2e-30	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	5e-31	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	MDP0000773068

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]