PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000772731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 506aa MW: 57083.1 Da PI: 5.1168 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.7 | 3.5e-17 | 9 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratk..sgyW 83 + pG+rF P +eel+ +yL +k++g ++ ++ + ++++y eP+ + + a ++k++yf ++ +k ++g+r +r+++ g+W MDP0000772731 9 MLPGYRFCPLEEELILHYLLPKANGMVVPGIDHvVFDFNLYGDqEPSAVWEnfktrR--AndlrRNKDLYFITELTTKVPRGSRISRTVAkgVGTW 102 579***********************9776554499999996549*99964244431..1445456689******************66623577* PP NAM 84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k k k+++ +++++g +k + + ++ +g+ +W+m ++ l MDP0000772731 103 KGDDKGKKICYPagTHNVIGYRKRFHYE--TKGSGKDDRWIMLQFDL 147 *********999777778*****99887..7888999*******987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-21 | 7 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.628 | 9 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-13 | 11 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MEHVYDDRML PGYRFCPLEE ELILHYLLPK ANGMVVPGID HVVFDFNLYG DQEPSAVWEN 60 FKTRRANDLR RNKDLYFITE LTTKVPRGSR ISRTVAKGVG TWKGDDKGKK ICYPAGTHNV 120 IGYRKRFHYE TKGSGKDDRW IMLQFDLHQS LIHNQQEKKY VLCVLRKNEE FDKKRKQLAE 180 EDDEMVGEDV DNKSARSLET QGKRQRLLPC VTELQYLQPR INMISSPPLA TGLAHAREEN 240 QGQELLVTCF NNVPSFADNE PSALQWEEAW CQQQQKLQPC IDNNNIVPAA VTLPDYFDQY 300 VGDTGYTATT QADRHYPYVS ETGFTSTTQA HDHPYVDASG FPVTTQAHDI HQYVDSTGLA 360 ASTQADHLHS YINGMGFSLS TQAHDLQQYV NSTRFAATTQ VDHLHSYVDG AGFDVTTQAH 420 DLHQYVDGTR FAATTQTDHL YPYADDTGFT ATTTQADHLY PPSNNVLGGL GDLISDNFES 480 DSMGGEDLWI SADELLRSTP DHANL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021806109.1 | 1e-80 | NAC domain-containing protein 12-like | ||||
TrEMBL | A0A498JPC6 | 0.0 | A0A498JPC6_MALDO; Uncharacterized protein | ||||
STRING | EMJ09360 | 1e-76 | (Prunus persica) | ||||
STRING | EMJ09772 | 1e-76 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20514 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71930.1 | 3e-15 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000772731 |