PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000755159

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 988aa MW: 111662 Da PI: 4.8951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000755159	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	4e-23	349	435	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e ++ + ++ t+t+Cka+l++k+++++kw+v+++++eHnHe++p MDP0000755159 349 YYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRELGTT---VNPRTCITKTDCKASLHIKRKESEKWVVHSFVKEHNHEICP 435 9*************************************999887...6667889*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-21	349	435	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-25	518	609	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.988	796	832	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0017	807	834	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MPSSPLGSSI RRVVGDTKLV ETSPILLKMK EEGVGKAIVV VVVDGGDKLD IRADKDVNIV 60 DVTDEINVEE ERVSYPIMSX RVKEVDGLNA EQGIGSDKDV DIVDISYXVN VEEEHVGSPX 120 TSYHVKEVDG LNAEQSVGLD KDVDILDVAD EINVVEESVS ALTTSEHVRG ADGLSAEESV 180 RSGKHVNGVD VPYEINVEAN VSSPTTNDHV KEVYGLNAEX RVGSDRDVDI VDVNDEINVD 240 EEHVSSLTSD CVKEEDGFNA DQSFGSDKDV DIVDITDEVN VEEEHVTSPI TSDHVMEVDG 300 LNAEQSVFSL NDQNDLNNVG VDSLDKGKGV VEEPENGLEF ESKEEAYSYY REYARSVGFG 360 ITIKASRRSK KSGKFIDIKI ACSRFGSKRE LGTTVNPRTC ITKTDCKASL HIKRKESEKW 420 VVHSFVKEHN HEICPDDFIY AISGRNKKPA IVVPQKTGLQ LALDEEDVRV MFEHFMSMQD 480 EDPNFFYAID FDHEKRLXSV FWVDSKCKRD YSSFCDAVFF DTYYVRNNYK IPFVPIVGVN 540 HHFQYILLGC ALIGEETTSA FVWLMRTWLK AVGGQAPVVV ITDQDKFLKE AVEDAFTDAR 600 HCFCLWHVLT RIPGNLGSIN EKETFIEKFS KCIYRSWTVE QFEKEWSKLV DRFELRENEW 660 VHSLYEDRKK WAPTYMQDSF LAGMSTRERS GSITSFFDRY ISQEATFKDF IEQYKAFCKD 720 SYDMEAGASL XTQDKQPGLR SFSPFEKQMS TIYTDAVFKK FEDEVFGLAS CHLKKEGENE 780 ASVIFRVTDL EERQNFIVSW NEADQKVCCL CHSFECRGFL CRHAILVLQV SGVYTIPSHY 840 ILKRWTKDAK VRHTVSDGSK RLNCRVQHFN DLCKLAVKLG EEGSLSPDAY HIALQALETV 900 MKHCVDVNNS VRSVLEPVSA NHGFIDVEXV DPSCSVAKLS KKKKTYKKRK VQTELDGTAI 960 RLQDSCQQME QSVGSSRKHR RDKHPPK*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MPSSPLGSSI RRVVGDTKLV ETSPILLKMK EEGVGKAIVV VVVDGGDKLD IRADKDVNIV  60
DVTDEINVEE ERVSYPIMSX RVKEVDGLNA EQGIGSDKDV DIVDISYXVN VEEEHVGSPX  120
TSYHVKEVDG LNAEQSVGLD KDVDILDVAD EINVVEESVS ALTTSEHVRG ADGLSAEESV  180
RSGKHVNGVD VPYEINVEAN VSSPTTNDHV KEVYGLNAEX RVGSDRDVDI VDVNDEINVD  240
EEHVSSLTSD CVKEEDGFNA DQSFGSDKDV DIVDITDEVN VEEEHVTSPI TSDHVMEVDG  300
LNAEQSVFSL NDQNDLNNVG VDSLDKGKGV VEEPENGLEF ESKEEAYSYY REYARSVGFG  360
ITIKASRRSK KSGKFIDIKI ACSRFGSKRE LGTTVNPRTC ITKTDCKASL HIKRKESEKW  420
VVHSFVKEHN HEICPDDFIY AISGRNKKPA IVVPQKTGLQ LALDEEDVRV MFEHFMSMQD  480
EDPNFFYAID FDHEKRLXSV FWVDSKCKRD YSSFCDAVFF DTYYVRNNYK IPFVPIVGVN  540
HHFQYILLGC ALIGEETTSA FVWLMRTWLK AVGGQAPVVV ITDQDKFLKE AVEDAFTDAR  600
HCFCLWHVLT RIPGNLGSIN EKETFIEKFS KCIYRSWTVE QFEKEWSKLV DRFELRENEW  660
VHSLYEDRKK WAPTYMQDSF LAGMSTRERS GSITSFFDRY ISQEATFKDF IEQYKAFCKD  720
SYDMEAGASL XTQDKQPGLR SFSPFEKQMS TIYTDAVFKK FEDEVFGLAS CHLKKEGENE  780
ASVIFRVTDL EERQNFIVSW NEADQKVCCL CHSFECRGFL CRHAILVLQV SGVYTIPSHY  840
ILKRWTKDAK VRHTVSDGSK RLNCRVQHFN DLCKLAVKLG EEGSLSPDAY HIALQALETV  900
MKHCVDVNNS VRSVLEPVSA NHGFIDVEXV DPSCSVAKLS KKKKTYKKRK VQTELDGTAI  960
RLQDSCQQME QSVGSSRKHR RDKHPPK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008342304.2	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A251Q5H3	0.0	A0A251Q5H3_PRUPE; Uncharacterized protein
STRING	XP_008342304.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	MDP0000755159

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]