PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000726295

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 14728 Da PI: 4.8503

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000726295	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.4	3.7e-08	1	23	21	43
HHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 21 lKKAeELSvLCdaevaviifsst 43 +KK +ELS+LC+++++ i++s+ MDP0000726295 1 MKKVKELSILCGIDASAIVYSHY 23 8********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.37E-11	1	66	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-6	1	22	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MKKVKELSIL CGIDASAIVY SHYDTKPEVG PDPDVTRRII TRFKQMQEMD KRKNMLNQES 60 ILRQQIVKVE EQLKKQNKEN QEKEIMIQSM YGSLPADCLQ NLSGTDLNGL LLSIEKSIEA 120 IEEEMQEA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008343298.2	4e-70	agamous-like MADS-box protein AGL80
TrEMBL	A0A498JCJ7	5e-68	A0A498JCJ7_MALDO; Uncharacterized protein
STRING	XP_008363238.1	7e-88	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17823	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27810.1	5e-19	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	MDP0000726295