PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000722905

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 767aa MW: 87360.8 Da PI: 6.3366

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000722905	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.3	2e-31	84	171	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r++tr+gCka+++vkk+++g+w v+kl++eHnHel+p MDP0000722905 84 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDGGEN--RSKRQRTVTRVGCKAQMTVKKQTSGRWAVSKLVKEHNHELVP 171 9***************************************9988..999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-28	84	171	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.7E-30	292	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.682	576	608	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-9	582	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-7	583	610	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MDSEPLNIDS DXQVVEFGEE DDAATATALH LQHTDHSYXI FDDHLVQXSN SPRSRDDFPN 60 XDGDPSLEPY EGMEFDSEQA SRIFYNSYAR RVGFSTRVSV YQRSRRDGSI ICRQIVCSRE 120 GFRRDGGENR SKRQRTVTRV GCKAQMTVKK QTSGRWAVSK LVKEHNHELV PPDRVHCLRS 180 HRHVSGPARS LIDTLQAAGM GPSGVMSVLI KESGGINNVG FTKVDCQNYM SSSRQRTLGS 240 GGQVVFDYLK RMQVEDPDFF CAVQGDFENS TGNIFWADAN SRMNYDYFGD TVTFDTTYRT 300 NRYRVPFAPF TGWNHHGQPV LFGCALLLNE SESSFVWLFQ TWLAAMSSRH PVSLTTDQDR 360 IIRAAVVHVF PGTRHRFCKW NVFREAQEKL SDIYHSHPTF EXELLKCINV TETIEEFESC 420 WESLVQRYDL GDNEWLQSIY DARQQWVPVF LQDTFFGEMS XTQGSDNINS YFDGYINAST 480 NIQVLIKQYE KAIATRHEKE VKADYDTMNS SPILRTPSPM EKQAAKLYTR IIFMKFQEEL 540 VETLAYPATV VDDTGSETMY GVAKFGEDHK VHSVKFNVFE KKARCSCQLF EFSGIICRHI 600 LAVFRVTNVL TLPSHYXLKR WTKNAKSGVV WDENTLGLPN DSQDSXAARY DNLRREAIKY 660 VEEGAESVHV YNVAMDALRE AANEVAAAKN HGLAIAQNTP VNCSQKLQSC TMDQDKKLEE 720 LAAXLEISSQ QCEAFREKLL AVLKDMEEQK LKISVNVQNV RLNLKV*

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MDSEPLNIDS DXQVVEFGEE DDAATATALH LQHTDHSYXI FDDHLVQXSN SPRSRDDFPN  60
XDGDPSLEPY EGMEFDSEQA SRIFYNSYAR RVGFSTRVSV YQRSRRDGSI ICRQIVCSRE  120
GFRRDGGENR SKRQRTVTRV GCKAQMTVKK QTSGRWAVSK LVKEHNHELV PPDRVHCLRS  180
HRHVSGPARS LIDTLQAAGM GPSGVMSVLI KESGGINNVG FTKVDCQNYM SSSRQRTLGS  240
GGQVVFDYLK RMQVEDPDFF CAVQGDFENS TGNIFWADAN SRMNYDYFGD TVTFDTTYRT  300
NRYRVPFAPF TGWNHHGQPV LFGCALLLNE SESSFVWLFQ TWLAAMSSRH PVSLTTDQDR  360
IIRAAVVHVF PGTRHRFCKW NVFREAQEKL SDIYHSHPTF EXELLKCINV TETIEEFESC  420
WESLVQRYDL GDNEWLQSIY DARQQWVPVF LQDTFFGEMS XTQGSDNINS YFDGYINAST  480
NIQVLIKQYE KAIATRHEKE VKADYDTMNS SPILRTPSPM EKQAAKLYTR IIFMKFQEEL  540
VETLAYPATV VDDTGSETMY GVAKFGEDHK VHSVKFNVFE KKARCSCQLF EFSGIICRHI  600
LAVFRVTNVL TLPSHYXLKR WTKNAKSGVV WDENTLGLPN DSQDSXAARY DNLRREAIKY  660
VEEGAESVHV YNVAMDALRE AANEVAAAKN HGLAIAQNTP VNCSQKLQSC TMDQDKKLEE  720
LAAXLEISSQ QCEAFREKLL AVLKDMEEQK LKISVNVQNV RLNLKV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373334.2	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5WTJ3	0.0	M5WTJ3_PRUPE; Uncharacterized protein
STRING	XP_008373334.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000722905

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]