PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000714374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 37976.2 Da PI: 7.2945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.1 | 5.7e-07 | 195 | 238 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ el+P+ + K++ +++LekA+ Y+k Lq MDP0000714374 195 IAAKNRRERISERLXIXXELVPNgC------KVDLVTMLEKAIXYVKFLQ 238 5679*******************77......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-10 | 188 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.887 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-8 | 189 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.09E-8 | 190 | 242 | No hit | No description |
SMART | SM00353 | 1.3E-6 | 194 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MALAKDIRIS TPHDSCTHES LQVSDLSDGF VFRATSNYQP DHLINFKSGY YNSGXSLLSF 60 DKNKQSSQSI YLNXSTSKDX CDSDLYHGSY SQWNQMAGIG DPRLSGDFSC LQTASNYSSS 120 IPNTSKEDHG DHEAYAWLHS EASDSFQEPD EQKAGFHKRP ITGESMQPSK KQCTGSTKKP 180 KPKSSTSPSK DPQSIAAKNR RERISERLXI XXELVPNGCK VDLVTMLEKA IXYVKFLQLQ 240 VKVLATDEFW PVQGGKAPDI SQVKEAIEAI LSSSQRDTSS SSKIFPNAIR ESVWCARHVP 300 ARGPRVWXCI DLCVRARETY HGDERHQSRL EGYDPSTYQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008381321.2 | 0.0 | putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 7e-62 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A498J5U8 | 0.0 | A0A498J5U8_MALDO; Uncharacterized protein | ||||
STRING | XP_008381321.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4937 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 1e-41 | RHD SIX-LIKE 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000714374 |
Publications ? help Back to Top | |||
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