PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000713910

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 275aa MW: 30260.4 Da PI: 6.5032

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000713910	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.8e-12	73	119	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f+ L llP++ K +K++i+ + ++YIksL+ MDP0000713910 73 HTWTERERRKKMRNMFSSLHALLPHL----PAKADKSTIVDESIRYIKSLE 119 6668*******************6....39***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.706	68	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-14	72	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	73	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.01E-12	73	123	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-13	73	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-8	76	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSCLEKKSIW AFPNSRTCSG GGDELLKLEN VSSSCPTPTN PVEKKEVVEI TESSDKAGEP 60 GGXAGGESDH GVHTWTERER RKKMRNMFSS LHALLPHLPA KADKSTIVDE SIRYIKSLEH 120 ILQTTQTQRL DKFSALPASY RELTCDTREA FLADHFHQGX QTSINLALPA ALSPPPASFQ 180 TWFSPNVVMN MSGNDAQISV CSPPKLGXST TLFYILEKHK LDVVSVHISS DRCXCMYMIH 240 AQVGGACDNF PEALSVEDTF KLAASEMNLW LLSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008367662.2	1e-130	transcription factor bHLH95
TrEMBL	A0A498JAA8	1e-156	A0A498JAA8_MALDO; Uncharacterized protein
STRING	XP_008378029.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4773	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000713910