PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000711374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 890aa MW: 99659.7 Da PI: 7.2565 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00024 | 708 | 737 | 20 | 54 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ Lr+++P+ + ++Ka+iL +++Y+k+L MDP0000711374 708 LFVLRSMVPSI-----TEVDKASILDDTIKYLKEL 737 6789*****96.....69***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.6E-49 | 258 | 436 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.019 | 688 | 737 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0047 | 695 | 743 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.48E-4 | 696 | 737 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-6 | 699 | 751 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-6 | 705 | 750 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence Send to blast |
MKTKTKTKKS KKGTMHACMQ GKIPKPPSAR ELIDLRHILF IKFPQVVKTQ DNDTCGMWEG 60 VKTKKKIIRW VTHPGSALAT FLLNFGVPTE PEASELSKGL VLGRDVNIHL RIPSLGDVGC 120 YNPPPLRGPT SSSAHFRPGI GFDTILSHPG PERITSQPSS TTVTRYCPFW APTTPSRFCF 180 WKLTSNFSVD HPSRSTILSV LVPDHALTVL FLGTHEQLPN GSLILGVLWP PSHLTSEFLR 240 NSKSENMAQN HERVPENLRK QFAVAVRSIK WSYAIFWSLS TTQQGVLEWG EGYYNGDIKT 300 RKTVEGVEIK TDKMGLQRNV QLRELYKSLL DGETEAEQQA KAPSAALSPE DLTDAEWYYL 360 LCMSFVFNPG EGLPGRALAT GQTIWLCNAQ HADSKVFSRS LLAKTVVCFP YLGGVIELGV 420 TELVMEDLNL IQHIKASLLD FSKPDCCEKS CSAPHKADDD SEQIAAKVXH DVVDTLYLEN 480 LYSPSEEIKF HHRGINDLHG NHEEVNIDSP YGCSNGCDHN HQTEDSMMLE GTNAASQVQS 540 WHFMDEDFSI QDSMNSSDCI SEAFVNQGKA HSSAKCKNAN HVNLKELQNF NDTKLSSLDL 600 ESVDEHVHYK RTLSALLASS TKLIENPCFC DGDCKSSFMK WKKIVVGGCR PTVHQKILKK 660 ILITVPLMSG VRSPRAIGKE NTEKNVFPNL QGDDTRREHD KMRESENLFV LRSMVPSITE 720 VDKASILDDT IKYLKELGAR AEEMESCMDT VEVIARRKFL NRVEKTSINY DKTKMDSVKR 780 SLLNKRKACD IDETDPYLNR LFPGESLPLD VKVCVKEQEV LIEMRCPYRE YILLDIMDAI 840 NNLYLDAHSV QSSTLDGVLT LNLKSKFRGA AISPVGMIKQ ALWKIAGKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-14 | 271 | 442 | 24 | 195 | Transcription factor MYC3 |
4rqw_B | 7e-14 | 271 | 442 | 24 | 195 | Transcription factor MYC3 |
4rs9_A | 7e-14 | 271 | 442 | 24 | 195 | Transcription factor MYC3 |
4yz6_A | 7e-14 | 271 | 442 | 24 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16241 | 0.0 | bud| cell culture| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR005623 | 0.0 | KR005623.1 Pyrus pyrifolia HLH33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951018.1 | 0.0 | transcription factor EGL1-like | ||||
TrEMBL | A0A498KNS2 | 0.0 | A0A498KNS2_MALDO; Uncharacterized protein | ||||
STRING | XP_009367859.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-146 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000711374 |