PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000711374
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 890aa    MW: 99659.7 Da    PI: 7.2565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000711374genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000247087372054
                    HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++ Lr+++P+      + ++Ka+iL  +++Y+k+L
  MDP0000711374 708 LFVLRSMVPSI-----TEVDKASILDDTIKYLKEL 737
                    6789*****96.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-49258436IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.019688737IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047695743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-4696737No hitNo description
Gene3DG3DSA:4.10.280.102.4E-6699751IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-6705750IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MKTKTKTKKS KKGTMHACMQ GKIPKPPSAR ELIDLRHILF IKFPQVVKTQ DNDTCGMWEG  60
VKTKKKIIRW VTHPGSALAT FLLNFGVPTE PEASELSKGL VLGRDVNIHL RIPSLGDVGC  120
YNPPPLRGPT SSSAHFRPGI GFDTILSHPG PERITSQPSS TTVTRYCPFW APTTPSRFCF  180
WKLTSNFSVD HPSRSTILSV LVPDHALTVL FLGTHEQLPN GSLILGVLWP PSHLTSEFLR  240
NSKSENMAQN HERVPENLRK QFAVAVRSIK WSYAIFWSLS TTQQGVLEWG EGYYNGDIKT  300
RKTVEGVEIK TDKMGLQRNV QLRELYKSLL DGETEAEQQA KAPSAALSPE DLTDAEWYYL  360
LCMSFVFNPG EGLPGRALAT GQTIWLCNAQ HADSKVFSRS LLAKTVVCFP YLGGVIELGV  420
TELVMEDLNL IQHIKASLLD FSKPDCCEKS CSAPHKADDD SEQIAAKVXH DVVDTLYLEN  480
LYSPSEEIKF HHRGINDLHG NHEEVNIDSP YGCSNGCDHN HQTEDSMMLE GTNAASQVQS  540
WHFMDEDFSI QDSMNSSDCI SEAFVNQGKA HSSAKCKNAN HVNLKELQNF NDTKLSSLDL  600
ESVDEHVHYK RTLSALLASS TKLIENPCFC DGDCKSSFMK WKKIVVGGCR PTVHQKILKK  660
ILITVPLMSG VRSPRAIGKE NTEKNVFPNL QGDDTRREHD KMRESENLFV LRSMVPSITE  720
VDKASILDDT IKYLKELGAR AEEMESCMDT VEVIARRKFL NRVEKTSINY DKTKMDSVKR  780
SLLNKRKACD IDETDPYLNR LFPGESLPLD VKVCVKEQEV LIEMRCPYRE YILLDIMDAI  840
NNLYLDAHSV QSSTLDGVLT LNLKSKFRGA AISPVGMIKQ ALWKIAGKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-1427144224195Transcription factor MYC3
4rqw_B7e-1427144224195Transcription factor MYC3
4rs9_A7e-1427144224195Transcription factor MYC3
4yz6_A7e-1427144224195Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162410.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0056230.0KR005623.1 Pyrus pyrifolia HLH33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951018.10.0transcription factor EGL1-like
TrEMBLA0A498KNS20.0A0A498KNS2_MALDO; Uncharacterized protein
STRINGXP_009367859.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-146bHLH family protein