PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000710285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 623aa MW: 69617.1 Da PI: 7.6583 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 318 | 364 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ MDP0000710285 318 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 364 799***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.2E-40 | 22 | 219 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 2.34E-13 | 312 | 368 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-17 | 312 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.037 | 314 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-9 | 318 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 318 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-15 | 320 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MEEIISSCSP PNFCQETSSK FQQSLQFIIQ NRPEWWVYSI FWQASKDSIS DQVSLSWAAG 60 HFQDTRDHLA SKRSNRVTNS YQPKFGFNNV GRKKMINREV EALLHDDMVD LDMRLVDQGD 120 VTDTEWFYFY TVSLTQSFSA SHGNNSDNIL GRAFGSGGFV WLAADHEFQF YECERVKEAR 180 MHGIQTLVCI ATPCGVLELA SLDVIKEDWG LVQLSKSLFG SDGNINKTLS QQTNHDGNVI 240 APILENGLFS AAQKELTRQD RGGINEAAPI NLGRSSPESP SDSVDNFTSE NTESMTRTKK 300 RGRSSNHGSA SRESQLLNHV EAERQRREKL NHRFYVLRSV VPNVSKMDRS SLLADAVAYI 360 NQLKSKVEEL EAKVQEQPQK PKAGNNASNS LDHHSGQSTS SKVEQRHCSN NNDGNIINSN 420 NNNNNNINSD RGAAAVVEVD VKILGSEAII HVQCPDQGYP YAKLMNALKG LGLQVYHASI 480 SSVKELMIQD VVARLPYGFT GEEALRNGIR CCLLEPYSPI DNDLFDCLLD SFLLLVFNKI 540 GDLKTLGRRC VVLCGGERLX TMWXSSDPIX STAGPTRTIF VCREMTCGGR NTSRHSRPRR 600 RXVCLISSRF RPKNLGKTRD RT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 8e-21 | 11 | 219 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-21 | 11 | 219 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 8e-21 | 11 | 219 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 8e-21 | 11 | 219 | 2 | 192 | Transcription factor MYC3 |
5gnj_A | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-22 | 317 | 373 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.26935 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008356558.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | A0A498JL86 | 0.0 | A0A498JL86_MALDO; Uncharacterized protein | ||||
STRING | XP_008356558.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 2e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000710285 |