PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000698017
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 680aa    MW: 78262.2 Da    PI: 6.8436
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000698017genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1842125490
           FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    n+YA + GFs+rk + ++ ++n+ + +r+++Cskeg++ +e+   e ++ +r  trtgCka ++ + e +g+w+++ ++  HnHe+a
  MDP0000698017  42 NTYAFNKGFSIRKGHLRRDSQNN-VRQREYTCSKEGFQVDEDLC-EARKVRRLDTRTGCKAVIRFNVE-NGVWKLSYINPIHNHEFA 125
                    89****************97766.****************9998.899999****************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1642125IPR004330FAR1 DNA binding domain
PfamPF105511.6E-24247342IPR018289MULE transposase domain
PROSITE profilePS5096610.373527563IPR007527Zinc finger, SWIM-type
PfamPF044348.8E-6538563IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-5538565IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDSDSQKESL EKSDNDEIFG EIDELRVGME VSDEAEAYQL CNTYAFNKGF SIRKGHLRRD  60
SQNNVRQREY TCSKEGFQVD EDLCEARKVR RLDTRTGCKA VIRFNVENGV WKLSYINPIH  120
NHEFARPEER QFLRSGRNIP SVRATILGSS KVDGSIRPPK LQSYLGKEFG SAENVGVSNK  180
DSHNCLQRGK DELIAGDGQS LINYFKHKQM EDPSFFYSVQ VDQFNRITNY FWRDGRSKLD  240
YDCFADVVCF DTTFQTNNNL ICAPFLGVNH HWKNISFGCA FLLDESTASF MWLFETFLES  300
MGNKQPVTIF TDENKAMEKA RAIEIVFPET RHLLCNWQIS KNATQHLGSL YADPEFKKHF  360
YKCFYDCFTE QELQHAWDDM IKMFNLESNS WLKMLYSLRD KWCPAFSSDA FSANIGSSQR  420
GENTNTIFHQ VSRKIVDLVS FVQHYEQKIK KMRFTELEED FRCKNAKPRL RVNSSIFKHA  480
ATEYTVKMYS FFEDELMSIF GVRMVEVGND GNQYIYEAIE EGHQRVFMIR YNSTTSTVSC  540
SCKLFESMGL LCRHALKVLD SKNFTSIPTQ YIVKRWTREA KKGIVASNKF SKSSDRKANS  600
AQSLRLSELM HEGTNVFSIG SLCDSGKRIV KQKLAETIKL LESDEETTYM LGNLSKVDDQ  660
SVRDMSLDNG SVESPGCDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338060.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5VVL20.0M5VVL2_PRUPE; Uncharacterized protein
STRINGXP_008338060.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5