PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000680042
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 328aa    MW: 35894.5 Da    PI: 6.0569
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000680042genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.77.7e-16157204353
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                    ++kr rrk +NRe+ArrsR+RK+a ++ Le  v++L +eN++L     +l+
  MDP0000680042 157 DIKRIRRKVSNRESARRSRRRKQAHLADLESQVEQLRGENSTLY---RQLT 204
                    58****************************************98...4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-14155219IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.335157203IPR004827Basic-leucine zipper domain
PfamPF001702.2E-13158203IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.11E-12159209No hitNo description
Gene3DG3DSA:1.20.5.1709.7E-12159195No hitNo description
CDDcd147021.02E-6160211No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.106.2E-4196230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEQKPRFHVE VHSXTASSPF ELKRSPSEVC LGEALEYLLE KPMIGQEAAD TQGHRDEKIG  60
ELRARDRGFA DTDVFFGDVC AGDHSFGFQN RVSHTQPLTL RDFRTPGSMG SPTSAAKPIG  120
GDNQARGAYS GSSGEQSDED DFEIEVSPCG DSTEPLDIKR IRRKVSNRES ARRSRRRKQA  180
HLADLESQVE QLRGENSTLY RQLTDAFQQF RDADTNNRVM KSDVEALRAK VKLAEDMVAR  240
GSMTSNLNQI LQGHLGTPQP LNPQNFRGVA THVSPTITIH GEDAPYAGIA VSGQNASFGL  300
GNAGMANSNL SNRMMSDTVS CVSDMWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161177RRKVSNRESARRSRRRK
2171178RRSRRRKQ
3173178SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113240.0bud| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367702.20.0basic leucine zipper 9-like
SwissprotQ9FUD38e-66BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A498HSR80.0A0A498HSR8_MALDO; Uncharacterized protein
STRINGXP_008367702.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-52basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]