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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000672131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 36491.2 Da PI: 4.9952 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5.1e-14 | 125 | 176 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P + + ++ + a+i A++Y+k+L+ MDP0000672131 125 QRMTHIAVERNRRKQMNEYLSVLRSIMPDS---YVQRGDQASIIGGAINYVKELE 176 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.05E-14 | 123 | 180 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 124 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.612 | 124 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-17 | 124 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-11 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MALEAVVFPQ DPFSYTANKD LYNLLGGTLS YVDDQQQASL DFLDYQTDQN YPNYGSTYSS 60 PPSMVPHFNE LHLSNPNPVA STTNPTGDQP EFQLPLEDTI NMSRSSRAKR RRAKSKKNEE 120 EIENQRMTHI AVERNRRKQM NEYLSVLRSI MPDSYVQRGD QASIIGGAIN YVKELEQEVQ 180 FLGVQKPNDR APFSEFFTFP QYSSRSSTSD HESAVSAMAE LPLLECRLSK IAADIEVTMV 240 ESHASLKVRS KKVPKQLLKI VSGLHDMHLT VLHLNVVTVD DIVLYSLSLK VEDECMLTSV 300 DEIATAVHEM LARIQEEAML NLN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 136 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12939 | 0.0 | bud| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008388591.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 3e-77 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A498IJQ3 | 0.0 | A0A498IJQ3_MALDO; Uncharacterized protein | ||||
STRING | XP_008388591.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000672131 |
Publications ? help Back to Top | |||
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