PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000670522
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 366aa    MW: 42324.5 Da    PI: 7.0587
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000670522genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1836119490
           FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    n+YA + GFs+rk + ++ k n+ it+r+f Cskeg++  ++   +++   + +tr+gCka ++ + + +g+w+++++++ HnHela
  MDP0000670522  36 NAYALRKGFSLRKGHIRRDKLNN-ITQRDFLCSKEGFPLFNDLC-DDNMVDKLTTRIGCKALIRFSVN-QGVWKISHVNSIHNHELA 119
                    89****************97777.***************99988.899999****************9.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1636119IPR004330FAR1 DNA binding domain
PfamPF105511.5E-22242319IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MESNQESVAV EATEFEEDLK IGMVVHSDAE AFQVCNAYAL RKGFSLRKGH IRRDKLNNIT  60
QRDFLCSKEG FPLFNDLCDD NMVDKLTTRI GCKALIRFSV NQGVWKISHV NSIHNHELAK  120
PEERQFLRSG RKMHDAHVGV ISSMVDAGIK PSQSYCYLAE EVGGAENVGF TKKDCLKFLY  180
RKKYETMEGG DAQSLFNHFK ERQARDSKFF YSIQVDQLNR MTNFFWRDDR SRLDYDYFGD  240
ALCFDTTFRT NKYNLICAVF VGVNHHWKNV LLGCXFLLDE STESFVWLFK TFLESMGNKQ  300
PKTIFTXEDQ AMANAIXQTT SIIEFVLHYE KKLEDMRLTE LQEDFRCKQG MPRLKVISGI  360
FMSCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355451.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251NC831e-138A0A251NC83_PRUPE; Uncharacterized protein
TrEMBLM5VQ591e-138M5VQ59_PRUPE; Uncharacterized protein
STRINGXP_009355451.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-58FAR1-related sequence 5