PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000664576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | DBB | ||||||||
Protein Properties | Length: 244aa MW: 26662.9 Da PI: 4.7158 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.4e-07 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ +++ C ++ lC++C +e H MDP0000664576 4 QCDACEKAPAKVICCADEAALCAKCDVEVHA 34 7***************************994 PP | |||||||
2 | zf-B_box | 29.2 | 1.9e-09 | 55 | 96 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k + +fC +++ l+C+dC + +H+ H MDP0000664576 55 KLPTCDICQDKAAFIFCVEDRALVCQDCDELIHSXnsrsanH 96 789******************************545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 8.802 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.29E-6 | 3 | 35 | No hit | No description |
SMART | SM00336 | 8.6E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-13 | 54 | 101 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.229 | 54 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-8 | 55 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-7 | 59 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKIQCDACEK APAKVICCAD EAALCAKCDV EVHAANKLAS KNQRLLLECL SKSNKLPTCD 60 ICQDKAAFIF CVEDRALVCQ DCDELIHSXN SRSANHQRFL ATGIRVALST GCSNDTEPSS 120 LEPPSSHSSH KIVSTKIPTP QASGISSPWG VDDLLQLSDF ESSDKKESFE FGELEWIADM 180 GVFGEEQFPQ KAMAAVAEVP KLLVSQSTNF TSYRPAKLNN PYKKPRIEML EDDDDHFTVP 240 DLG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1717 | 0.0 | bud| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ027697 | 0.0 | JQ027697.1 Malus zumi STO mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963367.1 | 1e-179 | B-box zinc finger protein 24-like | ||||
Swissprot | Q96288 | 1e-89 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A498J729 | 1e-178 | A0A498J729_MALDO; Uncharacterized protein | ||||
STRING | XP_009342646.1 | 1e-160 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3438 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 7e-89 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000664576 |
Publications ? help Back to Top | |||
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