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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000652584 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
NAC |
Protein Properties |
Length: 370aa MW: 41794.4 Da PI: 7.3184 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000652584 | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 172.2 | 1.6e-53 | 10 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
+ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
MDP0000652584 10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIGEVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIH 104
69****************************.9***************952444443456************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
++++ +g++ktLvfy+grap+g+ktdW+mheyrle
MDP0000652584 105 LTSSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 140
**********************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MAAGNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIGEVDLNKL EPWDLKEKCR 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLTSSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLE DDNITADQVQ QEDGWVVCRV FKKKNHNKGY QPEFAHHQDH 180 QEHEHFTNMK ASGSHAPILL DHHDHHQQKQ NHHRLEGLYD YPSSFDHAGS MHLPQLFSPE 240 SAVAASSFVS PHNINLNTMD IECSQNLLRL TSTAAAAAAA ASGSCGLVQQ QERSFISGGD 300 WSFLDKLLAS HQNLDINHST SQTKCNPSSS TQQLSNSHDH DHVGTSSSTQ QRFPFQYLGC 360 GTDFLKFSK*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-52 | 7 | 165 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 7 | 165 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 7 | 165 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 7 | 165 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-52 | 7 | 165 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 7 | 165 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Uniprot | TISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Publications
? help Back to Top |
- Fendrych M, et al.
Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] - Bennett T,van den Toorn A,Willemsen V,Scheres B
Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] - Karve R,Suárez-Román F,Iyer-Pascuzzi AS
The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] - Kamiya M, et al.
Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]
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