PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000628479
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 392aa    MW: 42793.5 Da    PI: 9.7573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000628479genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-1183154354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPk.as...................kapskKlsKaeiLekAveYIksL 54 
                    ++h ++E+rRRdri   +++Lr+l+Pk +                     aps  ++Ka+ L  +++++k+L
  MDP0000628479  83 KSHRQAEKRRRDRISAQLATLRKLVPKsDKyatkqmnylsxasapsepsLAPSMHMDKAALLGSVIDHVKEL 154
                    79*************************766****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.05280154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-983154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1283157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-983158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-783157No hitNo description
SMARTSM003534.3E-986160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.08E-4204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDYNCCYAGT GGVSWPQQYK SGAAPAAAAV SNESSSSFLV PRPPPPPHVS STNQFQFCGL  60
PPNSWSLTAA DGFEDDRDAS ASKSHRQAEK RRRDRISAQL ATLRKLVPKS DKYATKQMNY  120
LSXASAPSEP SLAPSMHMDK AALLGSVIDH VKELKRKAVE VSEAFIVPTE VDEVTIDCDP  180
AYGVTSTTTS STNINRGNFL ITASVCCDDR PELFSELVQI LKGLKLTAVR ADMASVGGRI  240
KSVLVLCSKD GEEAVCLSTL KQSLKLVLSK LAASPTAPNC RIRSKRQSDA TSLLGKTLSA  300
RRGIYETYTN PERSPSLAYL HLPSSFHLRR YRICKIHRSY KPSKAKQPQI WPGKGGAVVN  360
QSRRKTPLEQ AVMRCLIHQQ PINQPQDERE G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.157061e-152leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369274.11e-167transcription factor bHLH51
TrEMBLA0A498JFP81e-166A0A498JFP8_MALDO; Uncharacterized protein
STRINGXP_008369274.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-31bHLH family protein