PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000628479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 392aa MW: 42793.5 Da PI: 9.7573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.2e-11 | 83 | 154 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as...................kapskKlsKaeiLekAveYIksL 54 ++h ++E+rRRdri +++Lr+l+Pk + aps ++Ka+ L +++++k+L MDP0000628479 83 KSHRQAEKRRRDRISAQLATLRKLVPKsDKyatkqmnylsxasapsepsLAPSMHMDKAALLGSVIDHVKEL 154 79*************************766****************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.052 | 80 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-9 | 83 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 83 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-9 | 83 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.13E-7 | 83 | 157 | No hit | No description |
SMART | SM00353 | 4.3E-9 | 86 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.08E-4 | 204 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDYNCCYAGT GGVSWPQQYK SGAAPAAAAV SNESSSSFLV PRPPPPPHVS STNQFQFCGL 60 PPNSWSLTAA DGFEDDRDAS ASKSHRQAEK RRRDRISAQL ATLRKLVPKS DKYATKQMNY 120 LSXASAPSEP SLAPSMHMDK AALLGSVIDH VKELKRKAVE VSEAFIVPTE VDEVTIDCDP 180 AYGVTSTTTS STNINRGNFL ITASVCCDDR PELFSELVQI LKGLKLTAVR ADMASVGGRI 240 KSVLVLCSKD GEEAVCLSTL KQSLKLVLSK LAASPTAPNC RIRSKRQSDA TSLLGKTLSA 300 RRGIYETYTN PERSPSLAYL HLPSSFHLRR YRICKIHRSY KPSKAKQPQI WPGKGGAVVN 360 QSRRKTPLEQ AVMRCLIHQQ PINQPQDERE G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15706 | 1e-152 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369274.1 | 1e-167 | transcription factor bHLH51 | ||||
TrEMBL | A0A498JFP8 | 1e-166 | A0A498JFP8_MALDO; Uncharacterized protein | ||||
STRING | XP_008369274.1 | 1e-167 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000628479 |