PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000625989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 22065.3 Da PI: 5.021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.3 | 7.3e-05 | 31 | 48 | 38 | 55 |
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 ++Ka+i+e A+ YI++Lq MDP0000625989 31 MNKATIVEDAITYIQELQ 48 59***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.22E-10 | 9 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-6 | 10 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-8 | 11 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.40E-9 | 11 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAANSNPKNL VAERKRREKL SGRLLALRAL MNKATIVEDA ITYIQELQQK VNFLKDQLFE 60 MEESSEETLQ PNKEETHAAE EMKKFGIQTE VNVTKIDGNK LWVKTVLEKK RGGFTKLMEA 120 MTGFGFELTD TSVTTSNGVM MVSSCITVSH GKNKESSEIL PAPEVNINSN EFQGFCCDKL 180 EVEQTRELML EIINGI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 17 | ERKRRE |
2 | 13 | 18 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB733262 | 1e-145 | AB733262.1 Pyrus pyrifolia DNA, complete sequence, microsatellite: TsuGNH182, cultivar: Housui. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018505556.1 | 1e-109 | PREDICTED: transcription factor DYT1 | ||||
TrEMBL | A0A314YUK4 | 8e-76 | A0A314YUK4_PRUYE; Transcription factor DYT1 | ||||
STRING | XP_008349265.1 | 1e-118 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 4e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000625989 |