PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000623034
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 383aa    MW: 42830 Da    PI: 7.7077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000623034genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-1765112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WTteEd  lv++++++G+g+W+  ++  g++R++k+c++rw  yl
    MDP0000623034  65 KGPWTTEEDAMLVNYIQKHGPGNWRNLPKNAGLRRCGKSCRLRWTAYL 112
                      79******************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2156113IPR009057Homeodomain-like
PROSITE profilePS5129424.2260116IPR017930Myb domain
SuperFamilySSF466894.49E-2162156IPR009057Homeodomain-like
SMARTSM007174.9E-1464114IPR001005SANT/Myb domain
PfamPF002496.4E-1565112IPR001005SANT/Myb domain
CDDcd001679.17E-1167112No hitNo description
PROSITE profilePS500905.343114160IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-8114164IPR009057Homeodomain-like
SMARTSM007179.1115162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAGAKDCHCK STTMFHNSVT ALSFQEFNNK LATKDQHPTK LENSTSSATD NMRRAPCCDK  60
NGLKKGPWTT EEDAMLVNYI QKHGPGNWRN LPKNAGLRRC GKSCRLRWTA YLRRFSFEEE  120
ETIIQLHSIL GNKWAAPSAH DIKNYWNTHN DIKNYWNAHI RKRLLRMGID PVTHALRIDL  180
LDLSSILSSY VCNNPAAALL NLSNLLKSTQ QQQTLVNPEL LRLATSLLSI KQENPELCFE  240
GGHLMMLTVF PAPKDCALAF FFLIFSATPS VDELDESEKS VAHTASLHTA PCVDLLLKKH  300
ERTDGASVLF GVKLRTSTPL VYDLGPEKST GCIEVFLAHK DCALALLRGE LGATLLEELE  360
ESEKSALQTQ IKIVLQDDRT DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-15631642105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-15631642105C-Myb DNA-Binding Domain
1msf_C2e-15631642105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498HAT29e-90A0A498HAT2_MALDO; Uncharacterized protein
STRINGXP_008369502.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-66MYB-like 102