PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000617871
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 587aa    MW: 63685.9 Da    PI: 5.5649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000617871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-061471892255
                    HHHCTSCCC............TTS-STCHHHHHHHHHHHHHHH CS
            HLH  22 eLrellPkas.........kapskKlsKaeiLekAveYIksLq 55 
                    +L + lP +s         ++ s+K +Ka++L +++eY+k+Lq
  MDP0000617871 147 QLNSALPRSSskrsraaevHNMSEKTDKASMLDEVIEYLKQLQ 189
                    7888888855588999999999********************9 PP
2HLH39.79.1e-13386432555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h   Er RR++++s f++L  llP++      K +K++i+ +A++YIksL+
  MDP0000617871 386 HTWTERERRKKMRSMFSNLHALLPQL----PAKADKSTIVDEAIRYIKSLE 432
                    6668*********************6....39*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003530.087134194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6163199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-6167206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-4169193No hitNo description
PROSITE profilePS5088814.157381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14383441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13386441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.51E-13386436No hitNo description
PfamPF000105.0E-10386432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9389437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00284509548No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MADLYGTAPD SEEISNILSQ LIHGHGSSAS SCMPFKPTYM QSSVPPPIQA ATPSEVLIPE  60
ARHEDHRRFA QLVNRSGTDQ RVAGGNSNSA GVLASSSAFD FYDSGGYFTE EVKEGMESDG  120
RRISSENDLG GYSCDSEKGL EEAADAQLNS ALPRSSSKRS RAAEVHNMSE KTDKASMLDE  180
VIEYLKQLQL QVQMLTMRNG LSLHPMCLPG VMQPMQLPRI FEEGSNKFPK SGEGINPFYG  240
THENSVLSAF NLSAGCMISN PPMVIPSVAN VATSEATFGF EPSIQAHYXP YSVPSSSKAT  300
SLSTAPAQSV GGSGRSITSV SSDFQRVPGP LGPYMDPPVP REKVSSSGPT PTNTMEQKEV  360
VIKESSGKVG DRDRDGXGDE SDHGVHTWTE RERRKKMRSM FSNLHALLPQ LPAKADKSTI  420
VDEAIRYIKS LEHTLQTTQT QGLDKFSALT ASNTELTCDT REAFLADHFH QGPPTSNNLA  480
LPASLFPPPS FQTWFSPNFV MNMSGNDAQI SVCSPPKPGL LTTMFYILEK HKLDVVSAHV  540
SSDRYRCMYM IHAHAGAACD NFPEALSVED IFKLAAGEMN LWLLSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227211e-108bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021820184.10.0uncharacterized protein LOC110761908
TrEMBLA0A498HV620.0A0A498HV62_MALDO; Uncharacterized protein
STRINGXP_008220349.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-41bHLH family protein