PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000606021
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 927aa    MW: 97870.7 Da    PI: 7.0482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000606021genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11720765555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  MDP0000606021 720 HSIAERLRRERIAERMKALQELVPNA-----NKADKASMLDEIIDYVKFLQ 765
                    99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF537202.75E-13115483IPR016161Aldehyde/histidinol dehydrogenase
CDDcd07082016484No hitNo description
Gene3DG3DSA:3.40.605.102.0E-8516278IPR016162Aldehyde dehydrogenase N-terminal domain
PfamPF001717.8E-14324483IPR015590Aldehyde dehydrogenase domain
PROSITE patternPS006870263270IPR029510Aldehyde dehydrogenase, glutamic acid active site
Gene3DG3DSA:3.40.309.107.7E-61279460IPR016163Aldehyde dehydrogenase, C-terminal
PROSITE patternPS000700291302IPR016160Aldehyde dehydrogenase, cysteine active site
SuperFamilySSF474593.01E-16713775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-12713769No hitNo description
PROSITE profilePS5088817.136715764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16717774IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8720765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13721770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MAGSGLFAEI VDGEAYKYYA DGEWKKSSSG KLVPIINPTT RKVHYKVQAC TQEEVNKVME  60
TAKIAQKTWA KTPLWKRAEL LHKAASILKE HKAPIGESLX KEIAKPAKDA ITEVVRSGDL  120
VSYCAEEGVR ILGEGKFLVS DSFPGNDRTK YCLTSKIPLG VVLAIPPFNY PVNLAVSKIA  180
PALIAGNALV LKPPTQGAVS CLHMVHCFHX AGFPKGLISC VTGKGSEIGD FLTMHPGVDC  240
ISFTGGDTGX AISKKAGMIP LQMELGGKDA CIVLEDADLD LVAANIIKGG FSYSGQRCTA  300
VKVVLVMESV ADALVAKVNA RVAKLTVGPP EENSDITPVV SESSANFIEG LVVDAKQKGA  360
TFCQEYKREG NLIWPLLLDN VRPDMRIAWE EPFGPVLPVI RITTVEEGIH HCNASNFGLQ  420
GCVFTKDINK AILIGDAMET GTVQINSAPA RGPDHFPFQG IKDSGIGSQG ITNSINMMTK  480
IKTTPCSREM QEMNSLLREM QEMNSLLNSS ASSSQLSLQD HHHLQQQPHS HSQMHHQIPT  540
PSASHFDSAT HDDFLEQMLS TLGPSWASAA DDAPPPLSSN PDNVVFSYDD SATLAAKFRS  600
QQISAGSGAN KSASASAAAA XAMMLQHQLM MSRSGAADSG FGPTGLSLGN NGDFGRSNND  660
VGDGSSFKSP NQVGGQLQAQ NYGGAGAAXN QAPAGGSAGA APVQPRPRVR ARRGQATDPH  720
SIAERLRRER IAERMKALQE LVPNANKADK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA  780
AVAPLVADMS SEGGGDCIQA SANGGTRGRS SNGNQTASSS NDNSMTVTEH QVAKLMEKDM  840
GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPLLHNNSN NHQVVPSNGG DGPSSPSMSV  900
LTVQSATMGN GGVDGSVKDA TSVSKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1euh_A1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
1euh_B1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
1euh_C1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
1euh_D1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
1qi6_A1e-163164845470PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)
1qi6_B1e-163164845470PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)
1qi6_C1e-163164845470PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)
1qi6_D1e-163164845470PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)
2euh_A1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
2euh_B1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
2euh_C1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
2euh_D1e-163164845470NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1724729RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.18860.0bud| cell culture| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtImportant as a means of generating NADPH for biosynthetic reactions.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384496.20.0NADP-dependent glyceraldehyde-3-phosphate dehydrogenase isoform X2
RefseqXP_009366162.10.0PREDICTED: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
SwissprotP933380.0GAPN_NICPL; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
TrEMBLA0A498KJK70.0A0A498KJK7_MALDO; Uncharacterized protein
STRINGXP_008343904.10.0(Malus domestica)
STRINGXP_008384496.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-52LJRHL1-like 1
Publications ? help Back to Top
  1. Habenicht A,Quesada A,Cerff R
    Sequence of the non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Nicotiana plumbaginifolia and phylogenetic origin of the gene family.
    Gene, 1997. 198(1-2): p. 237-43
    [PMID:9370287]