PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000606021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 927aa MW: 97870.7 Da PI: 7.0482 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 720 | 765 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq MDP0000606021 720 HSIAERLRRERIAERMKALQELVPNA-----NKADKASMLDEIIDYVKFLQ 765 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53720 | 2.75E-131 | 15 | 483 | IPR016161 | Aldehyde/histidinol dehydrogenase |
CDD | cd07082 | 0 | 16 | 484 | No hit | No description |
Gene3D | G3DSA:3.40.605.10 | 2.0E-85 | 16 | 278 | IPR016162 | Aldehyde dehydrogenase N-terminal domain |
Pfam | PF00171 | 7.8E-143 | 24 | 483 | IPR015590 | Aldehyde dehydrogenase domain |
PROSITE pattern | PS00687 | 0 | 263 | 270 | IPR029510 | Aldehyde dehydrogenase, glutamic acid active site |
Gene3D | G3DSA:3.40.309.10 | 7.7E-61 | 279 | 460 | IPR016163 | Aldehyde dehydrogenase, C-terminal |
PROSITE pattern | PS00070 | 0 | 291 | 302 | IPR016160 | Aldehyde dehydrogenase, cysteine active site |
SuperFamily | SSF47459 | 3.01E-16 | 713 | 775 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-12 | 713 | 769 | No hit | No description |
PROSITE profile | PS50888 | 17.136 | 715 | 764 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-16 | 717 | 774 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-8 | 720 | 765 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-13 | 721 | 770 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0016620 | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MAGSGLFAEI VDGEAYKYYA DGEWKKSSSG KLVPIINPTT RKVHYKVQAC TQEEVNKVME 60 TAKIAQKTWA KTPLWKRAEL LHKAASILKE HKAPIGESLX KEIAKPAKDA ITEVVRSGDL 120 VSYCAEEGVR ILGEGKFLVS DSFPGNDRTK YCLTSKIPLG VVLAIPPFNY PVNLAVSKIA 180 PALIAGNALV LKPPTQGAVS CLHMVHCFHX AGFPKGLISC VTGKGSEIGD FLTMHPGVDC 240 ISFTGGDTGX AISKKAGMIP LQMELGGKDA CIVLEDADLD LVAANIIKGG FSYSGQRCTA 300 VKVVLVMESV ADALVAKVNA RVAKLTVGPP EENSDITPVV SESSANFIEG LVVDAKQKGA 360 TFCQEYKREG NLIWPLLLDN VRPDMRIAWE EPFGPVLPVI RITTVEEGIH HCNASNFGLQ 420 GCVFTKDINK AILIGDAMET GTVQINSAPA RGPDHFPFQG IKDSGIGSQG ITNSINMMTK 480 IKTTPCSREM QEMNSLLREM QEMNSLLNSS ASSSQLSLQD HHHLQQQPHS HSQMHHQIPT 540 PSASHFDSAT HDDFLEQMLS TLGPSWASAA DDAPPPLSSN PDNVVFSYDD SATLAAKFRS 600 QQISAGSGAN KSASASAAAA XAMMLQHQLM MSRSGAADSG FGPTGLSLGN NGDFGRSNND 660 VGDGSSFKSP NQVGGQLQAQ NYGGAGAAXN QAPAGGSAGA APVQPRPRVR ARRGQATDPH 720 SIAERLRRER IAERMKALQE LVPNANKADK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA 780 AVAPLVADMS SEGGGDCIQA SANGGTRGRS SNGNQTASSS NDNSMTVTEH QVAKLMEKDM 840 GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPLLHNNSN NHQVVPSNGG DGPSSPSMSV 900 LTVQSATMGN GGVDGSVKDA TSVSKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1euh_A | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
1euh_B | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
1euh_C | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
1euh_D | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
1qi6_A | 1e-163 | 16 | 484 | 5 | 470 | PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) |
1qi6_B | 1e-163 | 16 | 484 | 5 | 470 | PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) |
1qi6_C | 1e-163 | 16 | 484 | 5 | 470 | PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) |
1qi6_D | 1e-163 | 16 | 484 | 5 | 470 | PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE) |
2euh_A | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
2euh_B | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
2euh_C | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
2euh_D | 1e-163 | 16 | 484 | 5 | 470 | NADP DEPENDENT NON PHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 724 | 729 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1886 | 0.0 | bud| cell culture| fruit| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Important as a means of generating NADPH for biosynthetic reactions. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008384496.2 | 0.0 | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase isoform X2 | ||||
Refseq | XP_009366162.1 | 0.0 | PREDICTED: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | ||||
Swissprot | P93338 | 0.0 | GAPN_NICPL; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | ||||
TrEMBL | A0A498KJK7 | 0.0 | A0A498KJK7_MALDO; Uncharacterized protein | ||||
STRING | XP_008343904.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008384496.1 | 0.0 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-52 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000606021 |
Publications ? help Back to Top | |||
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