PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000603546
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 604aa    MW: 66466.6 Da    PI: 7.9616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000603546genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-11307352454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N +f  Lr+++P+       +++Ka+ L  Av YI++L
  MDP0000603546 307 NHVEAERQRREKLNCRFYALRSVVPNV-----SRMDKASLLSDAVVYINEL 352
                    799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.4E-3922208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-16301365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-13301356No hitNo description
PROSITE profilePS5088816.425303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-15307364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-15309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEEIISSCSS QNFGQENSPT LQRLQFLLQN RPERWVYSIF WEASKHSNDL VSLSWAGGHF  60
QSTRDLTSQK TYNKVSHHQP KLGFDVLERK RAISREVEAL FHEDMDLDGG DVTDAEWVYF  120
YTVSLTQSFT AGQGNSNILG RTFCSGGFVW LAGDHELQFY ECERVKEARM HGIQTLVCIA  180
TSCGVLELAS LDVIKENWGL VQLSKSLFES DNTATTTNKV SKQLSSSLEN HVPLLESGMF  240
SGADKNEWAT QGGTKEAAPV NVGGSSSDSG PSDSVGNLTS KNIENIRLKK RGRSSNRETG  300
RPESPINHVE AERQRREKLN CRFYALRSVV PNVSRMDKAS LLSDAVVYIN ELKARVGQLE  360
SKIQAQLQKP GVDIGGQTSS IVDHHQTRPR LSSSYNNRAG GALEMDVKIV GSEAMLRVQC  420
PDCDYPNARL MNALKDLELQ VYHASISSVK ELMLQDVVVR VPHGFTSEEA MRTAILERCN  480
LLPCILKGSK TTPNPNPTHA NISPLKPTSS FSTVATSSSS SSSYPSPKPK SSNLIAPSSV  540
STRRRPPSTS SSSFSSSSPG PSSSPPTFFY IFNSISLFLS HFTLYLHHIP VPYVVGFVDA  600
QNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-25303377481Transcription factor MYC2
5gnj_B5e-25303377481Transcription factor MYC2
5gnj_E5e-25303377481Transcription factor MYC2
5gnj_F5e-25303377481Transcription factor MYC2
5gnj_G5e-25303377481Transcription factor MYC2
5gnj_I5e-25303377481Transcription factor MYC2
5gnj_M5e-25303377481Transcription factor MYC2
5gnj_N5e-25303377481Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287293LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370020.20.0transcription factor MYC2-like
TrEMBLA0A498IA550.0A0A498IA55_MALDO; Uncharacterized protein
STRINGXP_008370020.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-59bHLH family protein