PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000600286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 121aa MW: 13325.5 Da PI: 6.2216 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.2e-10 | 16 | 43 | 19 | 47 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 ++ + W++Ia +++ gRt++++k++w+++ MDP0000600286 16 HPVDKWSKIAGRLP-GRTDNEIKNHWNTH 43 55567*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.231 | 1 | 48 | IPR017930 | Myb domain |
CDD | cd00167 | 9.74E-9 | 15 | 44 | No hit | No description |
Pfam | PF00249 | 4.5E-8 | 16 | 43 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-9 | 16 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-14 | 17 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MPAYDLAPPS SSQPLHPVDK WSKIAGRLPG RTDNEIKNHW NTHIKKKLLR MGIDPVTHEP 60 LHKEEELPSN IKENNSSSSS HDHDDHDNNL PADKSINGVH NSQENDQNVV NSSGSEGINS 120 * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354562.1 | 1e-49 | PREDICTED: protein ODORANT1-like | ||||
Refseq | XP_009354566.1 | 1e-49 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | A0A498K0J6 | 3e-42 | A0A498K0J6_MALDO; Uncharacterized protein | ||||
STRING | XP_009354562.1 | 4e-49 | (Pyrus x bretschneideri) | ||||
STRING | XP_009354566.1 | 4e-49 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16895 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 1e-24 | myb domain protein 85 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000600286 |