PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000599388
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 275aa    MW: 30230.3 Da    PI: 5.182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000599388genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.32.8e-10281573128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev...diykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                     G++F+P+ + l+ +yL +k+ gk+l++ e+ik++   + +  +P  +p +  ++ +e+++ +fF++   ++a  + + r +++ ++W+ + + k+
  MDP0000599388  28 WGLEFEPKPDSLLIYYLFNKLIGKPLPTVEMIKHLvsgKKNFPDPTFIPpEnfSFGSEKNKAFFFVPFVDEEA--DSSLRfTVRGSFWRFSSE-KS 120
                    599**********************9988888877432333447888875434566677799****9988765..456664677889996554.44 PP

            NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +    ++  +g+ +t++f+k+ +++g      m ey+l
  MDP0000599388 121 INHLhngEEVRIGTARTFIFFKNIQEEG---GYEMVEYKL 157
                    44433346667**********8777764...677777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.84526177IPR003441NAC domain
SuperFamilySSF1019419.94E-827162IPR003441NAC domain
PfamPF023658.7E-729157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAVSSDFNML EKALSVQEXY TAADLEMWGL EFEPKPDSLL IYYLFNKLIG KPLPTVEMIK  60
HLVSGKKNFP DPTFIPPENF SFGSEKNKAF FFVPFVDEEA DSSLRFTVRG SFWRFSSEKS  120
INHLHNGEEV RIGTARTFIF FKNIQEEGGY EMVEYKLLNS KALGIDPRLI QSRSFNDLLQ  180
LYSIVAITCH DGNLEKIKKG IVAPALLTGG GHQIILPPDA DIGAKESIAP LIDHISVNPD  240
SRAPSPAPQL GLFGLETVSV LARTTGAAGE ASTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359188.20.0uncharacterized protein LOC103422904
RefseqXP_028963860.10.0uncharacterized protein LOC103422904
TrEMBLA0A498J2W90.0A0A498J2W9_MALDO; Uncharacterized protein
STRINGXP_008357960.10.0(Malus domestica)