PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000581816
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 388aa    MW: 42114.3 Da    PI: 6.3766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000581816genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86e-06348374634
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...T CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askap 34 
                    +++Er RR ri +++ +L+el+P+ +   +
  MDP0000581816 348 SIAERVRRTRISERMRKLQELVPNmD---K 374
                    689********************977...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.267342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-5345374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-4346375No hitNo description
Gene3DG3DSA:4.10.280.107.0E-5347374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MESDLHQHHD KPQQHXNSSL TRYRSAPSSY FTNILDSEXC EPLFNRPSSP ETERIFSRFL  60
ASEGGGNGGG GGGGGTEEIV SQHKVETQIN NQQPQFMVPK VDDEVGVIQQ QQSNLNNYSS  120
VAQGFYQPSS KPPLPNQNLN EGAYSMGGSH LPSMKTSGDL ANSNLIRHSS SPAGLFSNMN  180
IDVAGYGTLR GMGNFGASNS TNEEASFSSA SRLXNFSSGP PSTSGLMSPI SEIGNKRMRS  240
NSQDARGFGD GRGNNYVTGF PMXSWDDSAI LGDDTGFRDD DVKAYTGLSP SETQDVEAGN  300
HPPTLLAHHL SLPKTSAEMA AIEKFLQFQD SVPCKIRAKR GCATHPRSIA ERVRRTRISE  360
RMRKLQELVP NMDKDEPGTN LTPSWLH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.102780.0leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352410.20.0transcription factor bHLH122-like isoform X1
RefseqXP_017182446.20.0transcription factor bHLH122-like isoform X1
TrEMBLA0A498K8N10.0A0A498K8N1_MALDO; Uncharacterized protein
STRINGXP_008352410.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-56bHLH family protein