PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000580841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 342aa MW: 38045.4 Da PI: 6.2878 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.3e-14 | 55 | 96 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W +Ia+ ++ gRt++++k++w++ MDP0000580841 55 SFTPHEEELIVRLHATIGSR-WPAIAQQLP-GRTDNDVKNYWNT 96 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.84E-19 | 11 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-11 | 11 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.436 | 12 | 47 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 20.654 | 48 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-13 | 52 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.15E-10 | 55 | 98 | No hit | No description |
Pfam | PF00249 | 1.3E-12 | 55 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 56 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MVRPACCDKL HVSKHGRSNW TSVPKKPVFT GITRCGKSSR LRWPNHLKPN LKHESFTPHE 60 EELIVRLHAT IGSRWPAIAQ QLPGRTDNDV KNYWNTKLKK KLSEMGIDPV THKPFSQVLX 120 DYGNIGGLPK VGMRIGIGSL NKDLKNAMLM EPAEPYLLTA QGFSNINSHL MPITMIPTKE 180 EPILDSFLGH NQPSSQPPDL LTQLQAIKLV TEASKSTEFQ SSAPNFYSHE GXLSSPSSTS 240 SSAAQEQATL QTFSWSDFLL EDAFMPIGDA QEHKNKGEYS SKNIAQVAVQ QSQIDMDYAI 300 SSNEVEATSP ACDSSFVXAM VSLENEMFLE FPELMEEPFY Y* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 12 | 102 | 22 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369384.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | A0A498JK48 | 0.0 | A0A498JK48_MALDO; Uncharacterized protein | ||||
STRING | XP_008346824.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-47 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000580841 |