PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000565402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 98aa MW: 10645.7 Da PI: 9.2854 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.2e-09 | 33 | 61 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 3 rahnerErrRRdriNsafeeLrellPk.a 30 ++h e++rrRR+riN+ +++L +llP+ MDP0000565402 33 KSHXEADRRRRKRINNHLAKLXSLLPSiT 61 79************************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00010 | 4.8E-7 | 33 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.11E-5 | 33 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-7 | 33 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-6 | 34 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MVQXGSAXFG LQAELGKLXA QEIMDAKALA ASKSHXEADR RRRKRINNHL AKLXSLLPSI 60 TKEPPXSDTR XGLINXGYXV EVAIVDXVST RAAEELC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297146.1 | 3e-22 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_011462943.1 | 3e-22 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_024191704.1 | 4e-22 | transcription factor bHLH30-like | ||||
Refseq | XP_024191705.1 | 4e-22 | transcription factor bHLH30-like | ||||
Refseq | XP_024191706.1 | 4e-22 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 6e-21 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2P6R228 | 9e-21 | A0A2P6R228_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004297146.1 | 1e-21 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000565402 |
Publications ? help Back to Top | |||
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