PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000565402
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 98aa    MW: 10645.7 Da    PI: 9.2854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000565402genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-093361330
                   HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
            HLH  3 rahnerErrRRdriNsafeeLrellPk.a 30
                   ++h e++rrRR+riN+ +++L +llP+  
  MDP0000565402 33 KSHXEADRRRRKRINNHLAKLXSLLPSiT 61
                   79************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000104.8E-73361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.11E-53362No hitNo description
Gene3DG3DSA:4.10.280.102.2E-73362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-63463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MVQXGSAXFG LQAELGKLXA QEIMDAKALA ASKSHXEADR RRRKRINNHL AKLXSLLPSI  60
TKEPPXSDTR XGLINXGYXV EVAIVDXVST RAAEELC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297146.13e-22PREDICTED: transcription factor bHLH30
RefseqXP_011462943.13e-22PREDICTED: transcription factor bHLH30
RefseqXP_024191704.14e-22transcription factor bHLH30-like
RefseqXP_024191705.14e-22transcription factor bHLH30-like
RefseqXP_024191706.14e-22transcription factor bHLH30-like
SwissprotQ9S7Y16e-21BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2P6R2289e-21A0A2P6R228_ROSCH; Putative transcription factor bHLH family
STRINGXP_004297146.11e-21(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-23bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]