PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000555913
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 498aa    MW: 55034.6 Da    PI: 6.732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000555913genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-17164210148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q G + W+ +a+++  gR +kqc++rw+++l
    MDP0000555913 164 KGQWTAEEDRKLIRLVQQCGERKWAQVAEKLV-GRAGKQCRERWHNHL 210
                      799*****************************.*************97 PP
2Myb_DNA-binding49.41.1e-15217258245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + WT+eE+  lvda+++ G++ W+ Ia++++ gRt++  k++w+
    MDP0000555913 217 DGWTEEEERVLVDAHAKVGNR-WAEIAKRIP-GRTENAXKNHWN 258
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.019159214IPR017930Myb domain
SuperFamilySSF466891.16E-28162257IPR009057Homeodomain-like
SMARTSM007179.6E-16163212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-26165218IPR009057Homeodomain-like
CDDcd001673.12E-14167210No hitNo description
PfamPF139218.0E-19167224No hitNo description
PROSITE profilePS5129419.693215265IPR017930Myb domain
SMARTSM007172.7E-14215263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-19219263IPR009057Homeodomain-like
CDDcd001671.30E-11219261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEGGRGGGGG DGDYGVYGFT NNTQDPPQHH NLCKAGPPLT AIDRFLWGSH QSQNNASNID  60
HQXVVFSNGL SGFASFGGGG GAIFGHEAAA SWPXNYSITD HLQEPSFVDE LFLEQGEALM  120
MSWVQEQNPN TTGGFGEEGK VSERSCKAVG KRSKKGLTAA TLIKGQWTAE EDRKLIRLVQ  180
QCGERKWAQV AEKLVGRAGK QCRERWHNHL RPDIKKDGWT EEEERVLVDA HAKVGNRWAE  240
IAKRIPGRTE NAXKNHWNAT KRRQTSKRKN KQPEGNNGNH KNKPHSSILQ NYIRSKNLMN  300
NSSNISNVST STPTSSSTLS QNDPSKTHLN TLVTEPSDQS TTSNCFGSPL NLADSFYDEL  360
VFMQNFFTNN PHNLNHPQQP XNSTDNNVEL IVSPMEPSQN PNMYDFATTS TTSSPSPTTT  420
TPLYSDLYLS YLLNGADNSS SYNSNYHXPH LGFYNTNMEY LASQDHHLQA AASXNEXREM  480
DLVEMVSASQ CTQGTSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-441622642104C-Myb DNA-Binding Domain
1msf_C3e-441622642104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129GGRGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385072.20.0transcription factor MYB119-like
TrEMBLA0A498INN00.0A0A498INN0_MALDO; Uncharacterized protein
STRINGXP_008385072.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-66myb domain protein 119