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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000555456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 412aa MW: 46992.4 Da PI: 9.344 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.5e-16 | 6 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f +l+ s++l+ ++l++p +f++++ ++ s+ +l+ ++gr+W v + +k ++++++ +GW eF + +++g f++F+++g+s+f +v++f+ MDP0000555456 6 FHKLIVSSTLQAKQLRIPESFVQKFRND--LSTIAKLTVPDGRVWHVGI--KKVDNKFWFHGGWLEFIEHYSIRVGYFLTFRYEGHSSF--TVHIFN 96 56777888899999*********99877..8899***************..**********************************9999..888875 PP | |||||||
2 | B3 | 61.8 | 1.2e-19 | 302 | 392 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ +g++ ++l++ +gr+W+v++ yr+++ l++GW eF +n+L egD++vF++ + ++ l+v+vfr MDP0000555456 302 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSADGRQWSVRCLYRGGR--AKLSQGWYEFTMDNNLGEGDVCVFEFLKMKDIVLKVTVFR 392 78899******************877743...5***************665555..66***********************988899989999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-22 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.79E-18 | 4 | 96 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-22 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.408 | 5 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 6 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-15 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-25 | 291 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-25 | 292 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.22E-22 | 297 | 392 | No hit | No description |
SMART | SM01019 | 2.2E-19 | 299 | 394 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.311 | 299 | 394 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-17 | 302 | 392 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MMTPYFHKLI VSSTLQAKQL RIPESFVQKF RNDLSTIAKL TVPDGRVWHV GIKKVDNKFW 60 FHGGWLEFIE HYSIRVGYFL TFRYEGHSSF TVHIFNLKTA EINYQPNALS STGGSIYRYQ 120 VFEEMEDDDS VEILGSSPTS IVTDSLRDKR FGDSANKLIP GKNCTPLLQN LFNGSKPKNC 180 MSRSDAGNLH LSKGDDLQAG NESTRDNGLQ FNVTELKKTV DEVKLRSPGE DTQSIKKTMR 240 KKRKVNPDVQ ESSSQQEKEV EIRFRFYESA SARKRTVTAE ERERAINAAK TFEPDNPFCR 300 VVLRPSYLYR GCIMYLPSCF AEKNLNGVSG FIKLQSADGR QWSVRCLYRG GRAKLSQGWY 360 EFTMDNNLGE GDVCVFEFLK MKDIVLKVTV FRVLEDAGFV NQPQKQHLTP S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-71 | 265 | 395 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-71 | 265 | 395 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2223 | 0.0 | fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008352816.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-130 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A498IYI6 | 0.0 | A0A498IYI6_MALDO; Uncharacterized protein | ||||
STRING | XP_008352816.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-129 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000555456 |
Publications ? help Back to Top | |||
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