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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000553864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Dof | ||||||||
Protein Properties | Length: 289aa MW: 30859.8 Da PI: 8.7647 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.4e-38 | 29 | 87 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ +cprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+ MDP0000553864 29 NQQPHRCPRCHSMNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKR 87 578899**************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-20 | 30 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.6E-33 | 31 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.658 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MQQQQQEGGE QNEQQNQDQR LKAAAEQENQ QPHRCPRCHS MNTKFCYYNN YSLSQPRYFC 60 KACRRYWTQG GTLRNVPVGG GCRKGKRGKA GSSSASAART VQPQQPQPPQ KEQDMQNTLG 120 IGGGSVGMST ENPSGGLAIH HQYYPGASHG YLSSLAGLQS LNQSQPFNVG GGHDPASNVS 180 LLQGFNLSAP LVATQPQQRQ QFYQMGGGRS NNLVDQAGPY PSENDQWPPQ SFVNRPSLNA 240 SSSAVAASDS ALWAMGNNPI TTTSSSGGST SLNPNLLPDL PGSYGSPN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017181530.1 | 0.0 | dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A498IXK5 | 1e-134 | A0A498IXK5_MALDO; Uncharacterized protein | ||||
STRING | XP_008349246.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 9e-26 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000553864 |