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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MDP0000550049 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | B3 | ||||||||
| Protein Properties | Length: 664aa MW: 73886.2 Da PI: 5.6136 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 62.3 | 8e-20 | 133 | 218 | 1 | 81 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
f+k+lt sd++++g +++p++ ae+ ++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
MDP0000550049 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVG 218
99*****************************9666655.49*******************************************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.19E-38 | 117 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 4.3E-32 | 126 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.39E-19 | 132 | 217 | No hit | No description |
| PROSITE profile | PS50863 | 10.56 | 133 | 237 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.7E-18 | 133 | 217 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.2E-16 | 133 | 237 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF54277 | 3.27E-5 | 592 | 663 | No hit | No description |
| PROSITE profile | PS51745 | 22.118 | 595 | 663 | IPR000270 | PB1 domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 664 aa Download sequence Send to blast |
MKLSASGLGQ QDHEGGGGGG VEKKCLNSEL WHACAGPLVS LPTRGTRVVY FPQGHSDQVA 60 ATTNKQIDAH LPNYPSLPPQ LICQLHNITM HADVETDEVY AQMTLQPLTP QEQKETFLPM 120 ELGLPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDFTLQPPA QELIARDLHD 180 VEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVGWD ESTAGERQPR VSLWEIEPLT 240 TFPMYPSLFP LRLKRPWHPG ASSMHDNRDE SNSLMWLRGG AVEQGLQSMN FQNVGMFPWM 300 QQRLDSTLIG NDHNQQYQAM LAAGSQNLGS GDQLRQQMMH FQQPFQYVQQ SGSHNPMLQL 360 QQQAIQQSIP HNILQGQQQV SMENMPQHLL QQQFNNQTDE QAQQHQNAYQ DALKVQNEQL 420 HQSQQMNVSS TSFLKTDLSD SSTKFSASTT PRQNMLGTLC PDGSGNLLSM SRAGHSMPTE 480 QSPQQSWAPK YAXGQANAFA NSMSFPPFNE KDNAVEQENL NSDTHNPTLF GVNIESSGLL 540 FPTSAPSFAT SSNDADISMP LGDSGLQRSL YGCMQDSSEL LHSAGQVDPP TPNNCTFVKV 600 YKSGSVGRSL DISRFSSYHE LREELGQMFG IEGKLEDRLR SGWQLVFVDR EDDVLLLGDD 660 PWE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 4e-88 | 20 | 217 | 45 | 242 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.23723 | 0.0 | fruit | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008343153.2 | 0.0 | auxin response factor 8 isoform X1 | ||||
| Swissprot | Q9FGV1 | 1e-141 | ARFH_ARATH; Auxin response factor 8 | ||||
| TrEMBL | A0A498HAH8 | 0.0 | A0A498HAH8_MALDO; Auxin response factor | ||||
| STRING | XP_008343153.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4958 | 28 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G37020.2 | 1e-143 | auxin response factor 8 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000550049 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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