PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000545428
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 196aa    MW: 21216.5 Da    PI: 9.1408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000545428genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.5e-0619581554
                   HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +i++   +L+ llP++ + ++  +s ++iLe+++ YIk L
  MDP0000545428 19 EIKELVLKLQPLLPQLHHLRNAPVSASSILEETCSYIKRL 58
                   67888889999****889********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.54458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-61872IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-71873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSRSSSSSS RASKSSDDEI KELVLKLQPL LPQLHHLRNA PVSASSILEE TCSYIKRLHR  60
EVEDLSKRLS ELLDSAGITD GTGSRKGPEG RWEEVQRWLA REPEQARAPG RWIRASPSAL  120
GGSDDGEYEG VGEGGGREGL GDGGADEVRV NARVKKVKKK RSHGXKWQLI KDSYCSLGGL  180
NSELPGGKAP RVELL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KKRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-12bHLH family protein