PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000534784

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 432aa MW: 44712.3 Da PI: 6.5083

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000534784	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	226	271	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq MDP0000534784 226 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 271 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.88E-13	219	275	No hit	No description
SuperFamily	SSF47459	5.1E-17	219	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	223	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	226	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MQEMNSLLNA SASASQLSLQ DHHHLQHHQQ QQSHSHSSQM HPQIPNPSAS HFDSATHDDF 60 LEQMLSTLGP SWASAADDAP PPSSSNPDNV VFSYDDSATL ASKFRSQQIS AGSGANKSAS 120 ASAAAAAAMM LQHQLMMSRS GAADSGFSPM GLSLGNNGDF DRSNNDVGDV SSFKSPNTVG 180 GQLQAQNYGG AGAAMNQAPA GGSAGAAPAQ PKPRVRARRG QATDPHSIAE RLRRERIAER 240 MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVADMSSEGG 300 GDCIQASANG GTRGRSSNGN QTASSSNDNS MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL 360 MPISLATAIS TATCHSRNPL LQNSNNNPVI PSNGGDGPSS PSMSVLTVQS ATMGNGGVEG 420 SVKDATSVSK P*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MQEMNSLLNA SASASQLSLQ DHHHLQHHQQ QQSHSHSSQM HPQIPNPSAS HFDSATHDDF  60
LEQMLSTLGP SWASAADDAP PPSSSNPDNV VFSYDDSATL ASKFRSQQIS AGSGANKSAS  120
ASAAAAAAMM LQHQLMMSRS GAADSGFSPM GLSLGNNGDF DRSNNDVGDV SSFKSPNTVG  180
GQLQAQNYGG AGAAMNQAPA GGSAGAAPAQ PKPRVRARRG QATDPHSIAE RLRRERIAER  240
MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVADMSSEGG  300
GDCIQASANG GTRGRSSNGN QTASSSNDNS MTVTEHQVAK LMEEDMGSAM QYLQGKGLCL  360
MPISLATAIS TATCHSRNPL LQNSNNNPVI PSNGGDGPSS PSMSVLTVQS ATMGNGGVEG  420
SVKDATSVSK P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5312	0.0	bud\| cell culture\| fruit\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009366166.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	8e-91	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A498HVG8	0.0	A0A498HVG8_MALDO; Uncharacterized protein
STRING	XP_008367760.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-64	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	MDP0000534784

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]