PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000534780
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 397aa    MW: 45670.9 Da    PI: 6.3587
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000534780genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.1e-104289255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   ++kGV   + +g W A+I+       +  r++lg+f +++eAa a++ a+ kl+g
  MDP0000534780 42 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 89
                   799997566.8******999......44*************************97 PP
2B382.15.4e-26169259182
                    EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f+k+ltpsdv+k++rlv+p + a+++         ++++ +s +l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk ++Lk++D+++F
  MDP0000534780 169 FQKELTPSDVSKLNRLVIPVTNAKRCfpsisesisQKVESGSSQLVFYDKMMRSWTFRYCYWKSSRSFVFTRGWSRFVKTHHLKAKDILTF 259
                    99******************************99988889999***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-234199No hitNo description
Gene3DG3DSA:3.30.730.109.3E-184297IPR001471AP2/ERF domain
SMARTSM003801.8E-2042103IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-154298IPR016177DNA-binding domain
PROSITE profilePS5103217.5564297IPR001471AP2/ERF domain
PfamPF008473.2E-64289IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-29165263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-25167262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-24168259No hitNo description
SMARTSM010199.5E-20169270IPR003340B3 DNA binding domain
PfamPF023624.2E-23169259IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66169284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEEGMSRTIS NVGVKRDVEE VCDPNLAAND SSDGASRHVS KRFKGVVEQP NGHWGAQIYA  60
NHERVWLGTF SSENEAAMAY DSAAIKLRGW ECHRNFPWTK VTFEEPHFQN QYSKEAVLRM  120
IKDXSYQAEF LEYRKSCAAS KSLRSGIQFD SLVRVHSNGN AKMLNRLLFQ KELTPSDVSK  180
LNRLVIPVTN AKRCFPSISE SISQKVESGS SQLVFYDKMM RSWTFRYCYW KSSRSFVFTR  240
GWSRFVKTHH LKAKDILTFF QCHYKQLGDN GNEEPQTFYM VKVNWDGAES EDDNINCLVE  300
NDANNYQYDK CKLKSVSQNI NEAEGILADQ KKRFRLFGVE ICNEEDNVGL GQEEEHGLGL  360
YEAQLLEWKD ELATVDPAIT SMRFDRLTSR YTIEDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-231682737103B3 domain-containing transcription factor NGA1
5os9_B7e-231682737103B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.216965e-36bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951083.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A498HW870.0A0A498HW87_MALDO; Uncharacterized protein
STRINGXP_008367756.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-80RAV family protein