PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000525527
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 197aa    MW: 22065.3 Da    PI: 5.021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000525527genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.3e-0531483855
                   STCHHHHHHHHHHHHHHH CS
            HLH 38 lsKaeiLekAveYIksLq 55
                   ++Ka+i+e A+ YI++Lq
  MDP0000525527 31 MNKATIVEDAITYIQELQ 48
                   59***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.22E-10963IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-61053IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-81167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-91151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAANSNPKNL VAERKRREKL SGRLLALRAL MNKATIVEDA ITYIQELQQK VNFLKDQLFE  60
MEESSEETLQ PNKEETHAAE EMKKFGIQTE VNVTKIDGNK LWVKTVLEKK RGGFTKLMEA  120
MTGFGFELTD TSVTTSNGVM MVSSCITVSH GKNKESSEIL PAPEVNINSN EFQGFCCDKL  180
EVEQTRELML EIINGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217ERKRRE
21318RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7332621e-146AB733262.1 Pyrus pyrifolia DNA, complete sequence, microsatellite: TsuGNH182, cultivar: Housui.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505556.11e-109PREDICTED: transcription factor DYT1
TrEMBLA0A314YUK48e-76A0A314YUK4_PRUYE; Transcription factor DYT1
STRINGXP_008349265.11e-118(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-38bHLH family protein