PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000523812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 231aa    MW: 25231.7 Da    PI: 5.3478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000523812genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.7e-16172217555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn+ E+rRR+riN+++  L  l+P++      K +Ka++L +A+eY+k+Lq
  MDP0000523812 172 HNMSEKRRRSRINEKMKALLNLIPNS-----NKTDKASMLDEAIEYLKQLQ 217
                    *************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-19164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-18164221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.13167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-13172217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.72E-17172221No hitNo description
SMARTSM003537.8E-17173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MADLYGSAPD SEEISNIISE LLHGHGSSAS SASSSMPFKP TYMHLLHSSV PLPLQAATQS  60
EFLIPEARHE DHGRFAQLVD RSGXDQRVVG GNSNSAGVLE SSSGFYFSDS GGYFTAEVKE  120
GMGPDGRRIS SENDLGDFSC DSEKGLEEAP DVQLNSAPPR SSSKRSRAAD VHNMSEKRRR  180
SRINEKMKAL LNLIPNSNKT DKASMLDEAI EYLKQLQLQV QVRWFSLFSE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367659.11e-126transcription factor SPATULA-like isoform X1
TrEMBLA0A498JAA81e-137A0A498JAA8_MALDO; Uncharacterized protein
STRINGXP_008347614.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-26bHLH family protein