PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000523812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25231.7 Da PI: 5.3478 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.9 | 5.7e-16 | 172 | 217 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L l+P++ K +Ka++L +A+eY+k+Lq MDP0000523812 172 HNMSEKRRRSRINEKMKALLNLIPNS-----NKTDKASMLDEAIEYLKQLQ 217 *************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.85E-19 | 164 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-18 | 164 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.13 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-13 | 172 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.72E-17 | 172 | 221 | No hit | No description |
SMART | SM00353 | 7.8E-17 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MADLYGSAPD SEEISNIISE LLHGHGSSAS SASSSMPFKP TYMHLLHSSV PLPLQAATQS 60 EFLIPEARHE DHGRFAQLVD RSGXDQRVVG GNSNSAGVLE SSSGFYFSDS GGYFTAEVKE 120 GMGPDGRRIS SENDLGDFSC DSEKGLEEAP DVQLNSAPPR SSSKRSRAAD VHNMSEKRRR 180 SRINEKMKAL LNLIPNSNKT DKASMLDEAI EYLKQLQLQV QVRWFSLFSE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008367659.1 | 1e-126 | transcription factor SPATULA-like isoform X1 | ||||
TrEMBL | A0A498JAA8 | 1e-137 | A0A498JAA8_MALDO; Uncharacterized protein | ||||
STRING | XP_008347614.1 | 1e-167 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2276 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 2e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000523812 |