PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000523715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 129aa    MW: 14665.9 Da    PI: 10.1168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000523715genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11450755
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +Er+RR+++ + ++ Lr+ lP       ++K s ++ + +A +YIk+Lq
  MDP0000523715  4 DIERQRRQEMGTLYASLRSQLPLeY---LKGKRSISDHVHQAGNYIKHLQ 50
                   69*********************77...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.153149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-5354No hitNo description
SuperFamilySSF474593.27E-12470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MQRDIERQRR QEMGTLYASL RSQLPLEYLK GKRSISDHVH QAGNYIKHLQ NNIEELHNKR  60
DQLKRTCNIL CSASTENTQC KMQDSVIIVR PCRAGMEVVV NTPLKQGLPL SRVLEIKDLA  120
RSAASQPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.235631e-117fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362828.12e-76PREDICTED: transcription factor bHLH120
SwissprotQ9FLI01e-29BH120_ARATH; Transcription factor bHLH120
TrEMBLA0A498JIR65e-80A0A498JIR6_MALDO; Uncharacterized protein
STRINGXP_009362828.18e-76(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]