PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000523715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 129aa MW: 14665.9 Da PI: 10.1168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.6e-11 | 4 | 50 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ + ++ Lr+ lP ++K s ++ + +A +YIk+Lq MDP0000523715 4 DIERQRRQEMGTLYASLRSQLPLeY---LKGKRSISDHVHQAGNYIKHLQ 50 69*********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.153 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.75E-5 | 3 | 54 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-12 | 4 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-9 | 4 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-8 | 4 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MQRDIERQRR QEMGTLYASL RSQLPLEYLK GKRSISDHVH QAGNYIKHLQ NNIEELHNKR 60 DQLKRTCNIL CSASTENTQC KMQDSVIIVR PCRAGMEVVV NTPLKQGLPL SRVLEIKDLA 120 RSAASQPK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23563 | 1e-117 | fruit| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362828.1 | 2e-76 | PREDICTED: transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 1e-29 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | A0A498JIR6 | 5e-80 | A0A498JIR6_MALDO; Uncharacterized protein | ||||
STRING | XP_009362828.1 | 8e-76 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 5e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000523715 |
Publications ? help Back to Top | |||
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