![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000518442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 246aa MW: 27462.5 Da PI: 6.3679 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.3 | 3e-55 | 72 | 175 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw +q i++++dfknh+lPlarikki+kadedv+misaeaPv++++ace+filelt+rsw+h+eenkrrtl+k+diaaa+trtdifdflv MDP0000518442 72 QLQKFWGEQhkeIDQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTMRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 167 89****9998889*********************************************************************************** PP NF-YC 94 divprdel 101 divpr++l MDP0000518442 168 DIVPREDL 175 *****987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.7E-34 | 54 | 166 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.2E-38 | 86 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-21 | 94 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MDQQGQGHGH PATMGVAGTA AQASYGVNPY GSVGMLQSPT QPAGPSAPSQ LAQHQLAYQH 60 IHQQQQQQLQ QQLQKFWGEQ HKEIDQTNDF KNHSLPLARI KKIMKADEDV RMISAEAPVI 120 FARACEMFIL ELTMRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV PREDLKDEVL 180 ASIPRGGNLP VGXPSDGVPY YYMPPQHAPQ VGAPGNQNMY GQQTHAYIAQ PTWPHQQQQP 240 HEDIE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-61 | 80 | 172 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 144 | 150 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.13270 | 0.0 | bud| fruit| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008340921.2 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 1e-76 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A498HGB7 | 0.0 | A0A498HGB7_MALDO; Uncharacterized protein | ||||
STRING | XP_008340921.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-75 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000518442 |