PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000514358
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 401aa    MW: 42950.4 Da    PI: 6.964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000514358genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.2e-052292493555
                    TS-STCHHHHHHHHHHHHHHH CS
            HLH  35 skKlsKaeiLekAveYIksLq 55 
                    s++ +Ka++L +A+eY+ksLq
  MDP0000514358 229 SERSDKASMLDEAIEYLKSLQ 249
                    67889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-7225265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-6228257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-4229253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MASWLQYPLV DEPFSAGLLY PDSTTSEHRS PQVSGLAPAS RXPIHRPRRT ELQNFLQSDT  60
TNNNDASSNR PMISETAPSS SKKSVVRETT TVVGSSDTPL VGSCSRALDS RPDGAGGGLA  120
NGATSLTLTA ATAATAATSF PGNELTTCEM SLTSSPGGSS ASAEPDSAPK PPLTADNRKR  180
KGREAAAADD DAEFQSRDVE FESANGKKQL RGLTSSTKRS RAAEVHNLSE RSDKASMLDE  240
AIEYLKSLQL QVQMMSMGYG MIPMMFPGVQ QMMSVPMGMG IGMGMGMGME MAGISHPMMP  300
FPNVMAGSPM PTAAALMGPR FPIPPFHMQP IPASDPTGVP AVNKTDQMIN SLRAQNPNQS  360
HMPNFADPYQ QFFSPQQMQL PLQHVWLLRI RNLNHKLVFT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.151621e-115leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2558590.0KU255859.1 Malus domestica phytochrome-interacting factor (PIF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188044.20.0transcription factor PIF1-like isoform X2
TrEMBLA0A498JXB90.0A0A498JXB9_MALDO; Uncharacterized protein
STRINGXP_008372429.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-21phytochrome interacting factor 3-like 5