PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000511374

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YC

Protein Properties

Length: 264aa MW: 30175.6 Da PI: 6.1702

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000511374	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	87.4	1.4e-27	10	83	22	92
NF-YC 22 PlarikkilkadedvkmisaeaPvllskace...lfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 P+ kki+kad+dv+mi aeaPvl++kace +fi e+t+rs lhaee++r l+k+d+a a+trtd+fdf+ MDP0000511374 10 PFFYTKKIMKADDDVHMIXAEAPVLFTKACEacdFFIXEFTIRSXLHAEESERXVLQKNDMAXAITRTDVFDFF 83 77778*********************9874447************************************7 PP
2	NF-YC	84.2	1.5e-26	115	196	14	92
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskace...lfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 t++ + Pl kki+kadedv+mis+eaPvl++kace +fi e t+ swlh ee+kr +k+d+aaa+t td+f f+ MDP0000511374 115 TEIIITXSPLFYTKKIMKADEDVHMISTEAPVLFTKACEacxFFIPEXTICSWLHVEESKRXXXQKNDMAAAITXTDMFXFF 196 556666779999**********************99855569**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.0E-18	15	83	IPR009072	Histone-fold
Pfam	PF00808	1.7E-8	15	74	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.58E-13	18	83	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.4E-17	126	196	IPR009072	Histone-fold
Pfam	PF00808	5.9E-7	128	187	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.39E-11	131	196	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MTEIIITSSP FFYTKKIMKA DDDVHMIXAE APVLFTKACE ACDFFIXEFT IRSXLHAEES 60 ERXVLQKNDM AXAITRTDVF DFFALHCTLL RDQYGEEKGV LNHVGXRCSH TSHMTEIIIT 120 XSPLFYTKKI MKADEDVHMI STEAPVLFTK ACEACXFFIP EXTICSWLHV EESKRXXXQK 180 NDMAAAITXT DMFXFFALYP ATRSMRRQWV LEIYSRRRXS GLAMDGDSDL KMILCYSGHH 240 NATLAVQVTE LSXAVFIRCS XPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-23	8	196	17	89	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022729999.1	5e-27	nuclear transcription factor Y subunit C-1-like
Refseq	XP_022921750.1	3e-27	nuclear transcription factor Y subunit C-1-like
Refseq	XP_022987443.1	3e-27	nuclear transcription factor Y subunit C-1
Refseq	XP_023516854.1	3e-27	nuclear transcription factor Y subunit C-1
Swissprot	Q9FMV5	4e-26	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
Swissprot	Q9SMP0	2e-26	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A498J7C7	1e-26	A0A498J7C7_MALDO; Uncharacterized protein
STRING	XP_010695369.1	2e-26	(Beta vulgaris)
STRING	XP_009619035.1	2e-26	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-28	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	MDP0000511374

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]