PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000506233
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 283aa    MW: 32497.6 Da    PI: 6.4263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000506233genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.57.4e-3841411127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                    lppG+rF Pt+eel+++yL++k+++++      l+++i+ v +y+++Pw+Lp+   +v++ + ++w+fF++r++++a+  r++r t++ yWk tg+
  MDP0000506233   4 LPPGYRFYPTEEELISFYLQNKLDRRSedlnRVLDRIIPVVFVYEFNPWELPQvsgEVSHgDPEQWFFFIPRQESEARXGRQRRLTTTWYWKXTGS 99 
                    79**********************99956532333469999***********645633332556*********************9********** PP

            NAM  89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                    +  v+s+    ++ +g k+t+ fy+grap+g+kt+W+m+ey+
  MDP0000506233 100 SSIVYSSnsnYKRPIGHKRTMGFYTGRAPHGKKTEWMMNEYK 141
                    ****9985554556***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-403183IPR003441NAC domain
PROSITE profilePS5100543.1284183IPR003441NAC domain
PfamPF023651.3E-205141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEDLPPGYRF YPTEEELISF YLQNKLDRRS EDLNRVLDRI IPVVFVYEFN PWELPQVSGE  60
VSHGDPEQWF FFIPRQESEA RXGRQRRLTT TWYWKXTGSS SIVYSSNSNY KRPIGHKRTM  120
GFYTGRAPHG KKTEWMMNEY KAIEVHADHN NQLSMAASSS NPSTSTPAPT LRQEFSLCRV  180
YKKSKCLREF DRPPQGIEIT RNPSLNIQAA PAQGANHLDQ HSTTSNRNPQ NMGERTNLSS  240
LESSSSGDHG LHSSQPEQSG TLLMAVENEA IWDWDELMDN WL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-26418317165NO APICAL MERISTEM PROTEIN
1ut4_B4e-26418317165NO APICAL MERISTEM PROTEIN
1ut7_A4e-26418317165NO APICAL MERISTEM PROTEIN
1ut7_B4e-26418317165NO APICAL MERISTEM PROTEIN
4dul_A4e-26418317165NAC domain-containing protein 19
4dul_B4e-26418317165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486RQESEARXGRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366767.11e-167PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A498HZT30.0A0A498HZT3_MALDO; Uncharacterized protein
STRINGXP_008391866.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-53NAC domain containing protein 90