PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000503672
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 538aa    MW: 60678.7 Da    PI: 6.8245
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000503672genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix933.1e-29126211187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+l+L+e+r+ ++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  MDP0000503672 126 RWPRQETLTLLEIRSGLDFKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 211
                    8***********************************998*******************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.713125184IPR017877Myb-like domain
PfamPF138372.7E-19126212No hitNo description
CDDcd122031.81E-20126191No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MEMEDQYNMS DLRQLMNGGR THFPSIPLQP TTELFPNHHR GPPPPPPPPS LHHQHHPYEQ  60
LMMIDRSQAH EMIPRGLHHH HEFRSPDSTS AAGVTTPTTV TAAPSLSGGG LEAEAGGCLG  120
GEGSGRWPRQ ETLTLLEIRS GLDFKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF  180
ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGETTNTV VSPSLPAETH FVGNNSNNYR  240
YQAAGNAQAN QEITTPYHHQ SSDQKHCDSL SLSNSSEFET SSSEDQDINN DVSAAAMDND  300
SQEVKTTRKR RGGIGRRGWK AKIKEFIDAQ MRKLIEKQEE WLERLMRTLE QKERERVVRE  360
EEWRKQEVDR VDREQNFWAK ERAWIEARDK ALMDALHKIS GGSSSTDQAK ATNYNSSSPD  420
HNDPDQIVHN MSRSAKELFM NKKRKENANS RSASAACYFQ SNESCSSLYS SQGGYCGEMS  480
NEQGNHDGSN NSPNGGNNAS NVGSNAVPDN CFPFLMSEGE NLWENYGLKL SKGSQNQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.231900.0bud| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352991.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A498I1W60.0A0A498I1W6_MALDO; Uncharacterized protein
STRINGXP_008359467.10.0(Malus domestica)
STRINGXP_008386941.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.18e-70Trihelix family protein