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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000502440 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
bHLH |
Protein Properties |
Length: 404aa MW: 44574.8 Da PI: 8.4801 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000502440 | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.6 | 3.4e-11 | 225 | 271 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++ ++f L ++P + kK++Ka++L A++++k+Lq
MDP0000502440 225 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKHVKELQ 271
699************************.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MSSSTPSSTT GVGRQRHXVG IXXDEQERWG QMMSLIEPLX AMSXRLRLRG MDYSFIPQCH 60 LNSLDDGFNA HDIGTALGEN FKQSFSSESY SSYSTLTTKN TPTTTTIASS GGSSINETSH 120 GTSFERPAKL LKTSSWNSII TENVSPKPCS SSSQILSFEN LNSPLPSKPQ KFCNKFEPAL 180 KPKDEXPSQI NMRFSHAQDY EAKGSSQGTK RPCPTSRTPX SHAQDHIMAE RKRREKLSQR 240 FIALSAIVPG LKKMDKASVL GDAIKHVKEL QERVKVLEER SKKRTVESVV FVKKSQLSAD 300 DDTSSCDENF DGCGPDEAAL PEIEARVSEK DVLIRIHCEK QKGVVVKILS EIEKLQLSVV 360 NSSVLPFGAS TLDITIMSQM DDGFNMTVKD LARKLRGALL TFM*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_B | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_E | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_F | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_G | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_I | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_M | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
5gnj_N | 6e-13 | 225 | 288 | 8 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 229 | 234 | ERKRRE |
2 | 230 | 235 | RKRREK |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |