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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000502367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | CPP | ||||||||
Protein Properties | Length: 483aa MW: 52589.1 Da PI: 8.1993 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.6 | 3.9e-16 | 160 | 198 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk MDP0000502367 160 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 198 689**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.6E-17 | 159 | 200 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 18.822 | 160 | 253 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.5E-12 | 162 | 197 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MVGARRKSLD NVPNSSSSML SQSDEKITTN DKQLVPMKPG GESSRCILPG IGLHLNALAT 60 TSKDYKTIKR ENMAYGRQLS LPNLTAPANS PTAGQGPGHE SFSSASSERD MDGTENGVQL 120 LQDASQEPAF LANEEFNQNS PKKKRHVLPK FEQAGETESS CKRCNCKKSK CLKLYCECFA 180 AGVYCIEPCS CQECFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRNADPV PEYGGGVGCS 240 ISCRCEGCKN TFGRKDETEA DEEEAEACGK SVAENHQQKN EIQENEEQHQ DSALPTTPLR 300 LSRQLVSLPF SSKNKPPRSS VFSIGSSSGL YTSQKLGILC PETKFERHIQ AVPEDEMPEI 360 LQGDGSPSTG IKTASPNGKR VCPPNREFAP SPGRRAGRKL ILQDGSTKGL GRSQDLSYLN 420 KRSVLQLAAC NEEEDSGGEL RRKKTGLLKN WSKTQWTRVV LGPPEARKNG CEDLQGPPKS 480 GK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217586 | 5e-58 | AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008390996.2 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
Swissprot | F4JIF5 | 9e-86 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A498HL32 | 0.0 | A0A498HL32_MALDO; Uncharacterized protein | ||||
STRING | XP_008351261.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 6e-66 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000502367 |
Publications ? help Back to Top | |||
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