PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000502135
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 707aa    MW: 78301.2 Da    PI: 10.4762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000502135genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-101044237
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     + W t E++llv+av+++G+ +W+++a ++g gR+ 
    MDP0000502135 10 QXWGTLEELLLVCAVNRHGTQSWDSVALEVG-GRCS 44
                     78*****************************.7763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-4744IPR009057Homeodomain-like
SMARTSM007174.7E-4866IPR001005SANT/Myb domain
PfamPF002492.9E-91061IPR001005SANT/Myb domain
CDDcd001677.35E-51264No hitNo description
SMARTSM002979.4E-16108439IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-16309459IPR001487Bromodomain
SuperFamilySSF473702.88E-18338442IPR001487Bromodomain
CDDcd043692.25E-8340434No hitNo description
PfamPF004392.8E-11342424IPR001487Bromodomain
PROSITE profilePS5001411.478348420IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MAGEHGTRTQ XWGTLEELLL VCAVNRHGTQ SWDSVALEVG GRCSAKATAL LTALNCRDKF  60
EDIKRRFVLG DDDDSSRSLG AMVDELRRVR VEELRREVRR RDVSIVSLEL KVKRLEEERE  120
RSLKEDAEAT RPSKDLKRGG XDQRDGSPEN LAGKMNSGSD FNSDERENRS FNESNSTSQR  180
GAAEKQAEGK EEEPGPERNE PDPMRAKIRS EPDRDCSVNG KVADDDDEDN QNNKNGDDTA  240
KASQLDDSSE LWESGGESKL EAKRGRRXGA VASRQQNSDV QSSASLSKRK RRRGGGGEGG  300
GGGSRSRSRS SSGEEAEGDE VSPATSKGVK QLKLVKSEPL IKVLKIIRSH RLGSVFERRL  360
RSQESERYKS LIRQHMDLHM IQSKLNKGVY TEDCIRLFFR DLLLLFNNAV VFFRKNSLEH  420
NAAQELRSIV LKEMNDQLPK PQSATETEKS NVPKIETKAP NIESHGSEKP TKSSIVVCGK  480
LGSVNALSDA KNRKGDKIEE KAKAANVKKA DGAAXVKVED KGVRXRRTQE RGGWRGTSTR  540
GRNAXKPTKP HEYGVNELSS HDGLDALKAE KEKKENGRKK QGAARFLKRM KQTSSTEVKK  600
ENSDGTEEDS EESEDEKKKK KKPTRVRRKP EVERKERVTR SSTESGGGRG GGRSQESNGR  660
GRRGVGRPPK RPETSAAGAG SGKRGRDNGE XGQVGSAGRP RKRTRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292KRKRRR
2288292RKRRR
3615622EKKKKKKP
4616629KKKKKKPTRVRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354994.20.0uncharacterized protein LOC103418669
TrEMBLA0A498KBU30.0A0A498KBU3_MALDO; Uncharacterized protein
STRINGXP_008354994.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.13e-22DNA-binding bromodomain-containing protein