PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000500940

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 334aa MW: 38448.6 Da PI: 4.83

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000500940	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.1	3.5e-11	145	209	22	86
trihelix 22 rrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++++l+ W+ev++k++e ++e++ +qC++ ++ l+k+ykk+++ k s+++s+++yf++++ MDP0000500940 145 GKKSLRSEEWQEVAEKVSEvSKIEKTDTQCRNQLDRLKKKYKKERAKFAKS-SGATSKWVYFTKMD 209 4567999********762678**********************95.88999******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-14	135	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDVKKFLEKF SEAAHAPTRL DRHGSTRLPR ASPTSSSPDW FFRWPENLRF FNLLQGYGSS 60 QRQKLPARGG VPYPRPIGTD YADDEEKDET DDDEELGEEK EDNNGQNGYP SVHKGVGDDD 120 HEDDSDDEED DEDDDAWGDR FLQRGKKSLR SEEWQEVAEK VSEVSKIEKT DTQCRNQLDR 180 LKKKYKKERA KFAKSSGATS KWVYFTKMDM FMSSLQQQAG LSCGLDSGEY VFMNPKXYLN 240 RANGLDEMRD SPGNSESAEG GDDDSDGLPP KXRRYGREND DRGSFRLLAD SIQKFSDIHE 300 KIENSKRKQM VELEKMRMDC HRDLNCIRGR LWR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008342714.2	1e-117	trihelix transcription factor ASIL2-like
Refseq	XP_008342715.2	1e-117	trihelix transcription factor ASIL2-like
TrEMBL	A0A498IZ85	1e-146	A0A498IZ85_MALDO; Uncharacterized protein
STRING	XP_008342714.1	1e-116	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-50	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000500940