PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000491271

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 245aa MW: 27323.9 Da PI: 10.3638

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000491271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	5.9e-10	46	106	3	44
HHHHHHHHHHHHHHHHHHHHHHCTSCCC......................TTS-STCHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas...................kapskKlsKaeiL 44 ++h+e E+rRR riNs + +Lr +lP + s+Kls iL MDP0000491271 46 KKHSESEKRRRMRINSQYTTLRAILPDLIkvyylidlmefclnvygvlXKMSRKLSSLRIL 106 68*************************9989999999999999999996666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-9	35	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-4	36	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.573	43	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-7	46	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-4	46	130	No hit	No description
SMART	SM00353	1.4E-5	49	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-9	107	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-9	108	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	9.27E-5	170	231	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.2E-5	171	215	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MQSTQSYYPK QISFPKGQRV LLTNNIYNKN FFKPKSKAEA KVIAAKKHSE SEKRRRMRIN 60 SQYTTLRAIL PDLIKVYYLI DLMEFCLNVY GVLXKMSRKL SSLRILDIQM DKASVLGETV 120 RKVRELKKAL TEVEAACHCG DRRDECVLPG GVDKLSVEQC EGEKGGLVKA TFSCEDRLGL 180 ISDMTRALSC VKGRVVRAEM VTVGGRSKNA LWVQGLGGGN EGVVALKRAL KVVIDRPVLP 240 RNII*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235541.1	1e-105	PREDICTED: transcription factor bHLH131-like
TrEMBL	A0A498HTJ4	1e-177	A0A498HTJ4_MALDO; Uncharacterized protein
STRING	XP_008373852.1	1e-145	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	3e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000491271