 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MDP0000485280 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
RAV |
| Protein Properties |
Length: 354aa MW: 40896.1 Da PI: 6.2545 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000485280 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 31.2 | 5.6e-10 | 47 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++kGV ++g W A+I+ + +r++lg+f +++eAa a++ a+ kl++
MDP0000485280 47 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAVKLRN 94
789996.566899****999......44**********99************997 PP
|
| 2 | B3 | 93.8 | 1.2e-29 | 172 | 267 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+k+ltpsdv+k++rlv+pkk+a e+ +++ +e+++l+++d+ r+W+++++y+++s+++v+t+GW++Fvk+n+Lk++D+++F+ + s
MDP0000485280 172 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenxEENVTEDIELVFYDKLMRVWKFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVITFYACE-S 266
99*****************************9997777899**************************************************654.4 PP
E CS
B3 89 e 89
+
MDP0000485280 267 D 267
4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MAEDASIMIS SAQRNVGLET SDSNETDFAL LHQNKRARHD NDXSFAKFKG VVPQQNGHWG 60
AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGKDLHR NFPWTNFTIQ EPDFQNHYTT 120
EAIIKMIRDG SYPSKFDAFM RSQAQSQIEE MSKGTNPIRV HGDGQVLCRQ LFQKELTPSD 180
VGKLNRLVIP KKYAVEYFPC ICENXEENVT EDIELVFYDK LMRVWKFRYC YWRSSQSFVF 240
TRGWNRFVKE NNLKANDVIT FYACESDGQV IREEDRESTT FWLIDVMHSE GESKRSCFVE 300
EASECKDLQV KLELNLGECS SSKFQKGEGK YSEDHRXSIA EEKGIRLFGV NIN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
