PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000461727 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 644aa MW: 72434.2 Da PI: 5.9341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00016 | 462 | 491 | 20 | 54 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ Lr+++P+ + ++Ka+iL +++Y+k+L MDP0000461727 462 LFVLRSMVPSI-----TEVDKASILDDTIKYLKEL 491 6789*****96.....69***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-49 | 12 | 190 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.019 | 442 | 491 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0047 | 449 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-4 | 450 | 491 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-6 | 453 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-6 | 459 | 504 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MAQNHERVPE NLRKQFAVAV RSIKWSYAIF WSLSTTQQGV LEWGEGYYNG DIKTRKTVEG 60 VEIKTDKMGL QRNVQLRELY KSLLDGETEA EQQAKAPSAA LSPEDLTDAE WYYLLCMSFV 120 FNPGEGLPGR ALATGQTIWL CNAQHADSKV FSRSLLAKTV VCFPYLGGVI ELGVTELVME 180 DLNLIQHIKA SLLDFSKPDC CEKSCSAPHK ADDDSEQIAA KVXHDVVDTL YLENLYSPSE 240 EIKFHHRGIN DLHGNHEEVN IDSPYGCSNG CDHNHQTEDS MMLEGTNAAS QVQSWHFMDE 300 DFSIQDSMNS SDCISEAFVN QGKAHSSAKC KNANHVNLKE LQNFNDTKLS SLDLESVDEH 360 VHYKRTLSAL LASSTKLIEN PCFCDGDCKS SFMKWKKIVV GGCRPTVHQK ILKKILITVP 420 LMSGVRSPRA IGKENTEKNV FPNLQGDDTR REHDKMRESE NLFVLRSMVP SITEVDKASI 480 LDDTIKYLKE LGARAEEMES CMDTVEVIAR RKFLNRVEKT SINYDKTKMD SVKRSLLNKR 540 KACDIDETDP YLNRLFPGES LPLDVKVCVK EQEVLIEMRC PYREYILLDI MDAINNLYLD 600 AHSVQSSTLD GVLTLNLKSK FRGAAISPVG MIKQALWKIA GKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-13 | 25 | 196 | 24 | 195 | Transcription factor MYC3 |
4rqw_B | 1e-13 | 25 | 196 | 24 | 195 | Transcription factor MYC3 |
4rs9_A | 1e-13 | 25 | 196 | 24 | 195 | Transcription factor MYC3 |
4yz6_A | 1e-13 | 25 | 196 | 24 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16241 | 0.0 | bud| cell culture| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR005623 | 0.0 | KR005623.1 Pyrus pyrifolia HLH33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951018.1 | 0.0 | transcription factor EGL1-like | ||||
TrEMBL | A0A498KNS2 | 0.0 | A0A498KNS2_MALDO; Uncharacterized protein | ||||
STRING | XP_009367859.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-150 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000461727 |