PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000457620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 394aa MW: 44216.8 Da PI: 6.5918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 107 | 148 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E+el+v++++ G++ W +Ia+ ++ gRt++++k++w++ MDP0000457620 107 SFTPHEEELIVRLHATIGSR-WPAIAQQLP-GRTDNDVKNYWNT 148 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 84 | 112 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-18 | 85 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.654 | 100 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-13 | 104 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-10 | 107 | 150 | No hit | No description |
Pfam | PF00249 | 1.6E-12 | 107 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 113 | 151 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MATSTDRAIS LGHPRLSKPK RWTGSVTIFS NATRLFIKCM TSLTEDARAR YTKEMDMKKS 60 RQKDNGRDVE EMHKERYTXV FTGITRCGKS SRLRWPNHLK PNLKHESFTP HEEELIVRLH 120 ATIGSRWPAI AQQLPGRTDN DVKNYWNTKL KKKLSEMGID PVTHKPFSQV LXDYGNIGGL 180 PKVGMRIGIG SLNKDLKNAM LMEPAEPYLL XAQGFSNINS HLMPITMIPT KEEPILDSFL 240 GHNQPSSQPP DLLTQLQAIK LVTEASKSTE FQSSAPNFYS HEGXLSSPSS TSSSAAQEQA 300 TLQTFSWSDF LLEDAFMPIG DAQEHKNKGE YSSKNIAQVA VQQSQIDMDY AISSNEVEAT 360 SPACDSSFVX AMVSLENEMF LEFPELMEEP FYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-18 | 63 | 154 | 12 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369384.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | A0A498JK48 | 0.0 | A0A498JK48_MALDO; Uncharacterized protein | ||||
STRING | XP_008346824.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 4e-41 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000457620 |