PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000449389
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 418aa    MW: 46051 Da    PI: 9.5173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000449389genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849.4e-2782132151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    krien + rqvt skRrng+lKKA+E SvLCdaevaviifs++++lye+ss
  MDP0000449389  82 KRIENATSRQVTXSKRRNGLLKKAYEXSVLCDAEVAVIIFSQKDRLYEFSS 132
                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.88574134IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-3574133IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-277696IPR002100Transcription factor, MADS-box
CDDcd002654.63E-3376133No hitNo description
SuperFamilySSF554552.09E-2576141IPR002100Transcription factor, MADS-box
PfamPF003191.6E-2283130IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-2796111IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-27111132IPR002100Transcription factor, MADS-box
PfamPF001411.7E-59156382IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITE profilePS5087356.511175417IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.520.101.1E-17175270No hitNo description
CDDcd006931.15E-134175416No hitNo description
SuperFamilySSF481132.06E-77178417IPR010255Haem peroxidase
PRINTSPR004611.6E-32193206IPR000823Plant peroxidase
PRINTSPR004611.6E-32212222IPR000823Plant peroxidase
PRINTSPR004581.7E-21213230IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004581.7E-21231243IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004611.6E-32231246IPR000823Plant peroxidase
Gene3DG3DSA:1.10.420.107.3E-47271397No hitNo description
PRINTSPR004611.6E-32277289IPR000823Plant peroxidase
PRINTSPR004581.7E-21278293IPR002016Haem peroxidase, plant/fungal/bacterial
PROSITE patternPS004350278288IPR019793Peroxidases heam-ligand binding site
PRINTSPR004611.6E-32336351IPR000823Plant peroxidase
PRINTSPR004581.7E-21338353IPR002016Haem peroxidase, plant/fungal/bacterial
PRINTSPR004611.6E-32352369IPR000823Plant peroxidase
PRINTSPR004611.6E-32392405IPR000823Plant peroxidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTTVCRHRTM RWPVSIGSSA RSLGRRTRGI IEGALDQYGR KMVVWPENKE KKEIGHNQIK  60
NSFFAFPALQ SQDMVRGKIX MKRIENATSR QVTXSKRRNG LLKKAYEXSV LCDAEVAVII  120
FSQKDRLYEF SSSEXVEQIA SNLVASGGLV GVCNDAFHQG SKGLRNWINX MPXGDSTAGN  180
QAEKDDPPNI SVRSFYVIDD AKVKLEAACP HTVSCADIVG IAARDVVIMS GGPFWNXLKG  240
RKDGRVSRAN ETINLPAPTF NXSQLIQSFA KRGLGXKDLV ALSGGHTLGF SHCSSFESRL  300
RNFSSVHDVD PTMNKEFAQK LRTKCSKPNR DITAGELLDS TSSTFDNNYY KQLVAGKGVF  360
GSDQALFSDY RTGWIVESFA KDQSVFFKEF AASMVNLGNV GVIEDGGEVR LNCHVVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qgj_A7e-5917941757299PEROXIDASE N
1qgj_B7e-5917941757299PEROXIDASE N
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRemoval of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640116e-85KP164011.1 Pyrus pyrifolia clone PpSOC1-2 SOC1-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376941.21e-173peroxidase 66-like
SwissprotQ9LT911e-123PER66_ARATH; Peroxidase 66
TrEMBLA0A498KLV01e-170A0A498KLV0_MALDO; Peroxidase
STRINGXP_008343715.11e-176(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.41e-27AGAMOUS-like 42
Publications ? help Back to Top
  1. Tognolli M,Penel C,Greppin H,Simon P
    Analysis and expression of the class III peroxidase large gene family in Arabidopsis thaliana.
    Gene, 2002. 288(1-2): p. 129-38
    [PMID:12034502]
  2. Welinder KG, et al.
    Structural diversity and transcription of class III peroxidases from Arabidopsis thaliana.
    Eur. J. Biochem., 2002. 269(24): p. 6063-81
    [PMID:12473102]
  3. Valério L,De Meyer M,Penel C,Dunand C
    Expression analysis of the Arabidopsis peroxidase multigenic family.
    Phytochemistry, 2004. 65(10): p. 1331-42
    [PMID:15231406]
  4. Sato Y, et al.
    Isolation and characterization of a novel peroxidase gene ZPO-C whose expression and function are closely associated with lignification during tracheary element differentiation.
    Plant Cell Physiol., 2006. 47(4): p. 493-503
    [PMID:16446311]
  5. Tokunaga N,Kaneta T,Sato S,Sato Y
    Analysis of expression profiles of three peroxidase genes associated with lignification in Arabidopsis thaliana.
    Physiol Plant, 2009. 136(2): p. 237-49
    [PMID:19453502]